Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1703 and PP_1705 are separated by 270 nucleotides PP_1705 and PP_1706 overlap by 1 nucleotides PP_1706 and PP_1707 are separated by 127 nucleotides
PP_1703: PP_1703 - assimilatory nitrate reductase/sulfite reductase, at 1,899,450 to 1,903,475
_1703
PP_1705: PP_1705 - nitrite reductase [NAD(P)H] large subunit, at 1,903,746 to 1,906,298
_1705
PP_1706: PP_1706 - Nitrite reductase, at 1,906,298 to 1,906,660
_1706
PP_1707: PP_1707 - D-isomer specific 2-hydroxyacid dehydrogenase family protein, at 1,906,788 to 1,907,738
_1707
Position (kb)
1903
1904
1905
1906
1907 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1902.855 kb on + strand, within PP_1703 at 1902.933 kb on - strand, within PP_1703 at 1903.061 kb on + strand, within PP_1703 at 1903.167 kb on + strand at 1903.167 kb on + strand at 1903.168 kb on - strand at 1903.171 kb on - strand at 1903.254 kb on + strand at 1903.254 kb on + strand at 1903.254 kb on + strand at 1903.254 kb on + strand at 1903.254 kb on + strand at 1903.255 kb on - strand at 1903.255 kb on - strand at 1903.255 kb on - strand at 1903.255 kb on - strand at 1903.255 kb on - strand at 1903.317 kb on + strand at 1903.317 kb on + strand at 1903.317 kb on + strand at 1903.318 kb on - strand at 1903.318 kb on - strand at 1903.323 kb on + strand at 1903.323 kb on + strand at 1903.323 kb on + strand at 1903.323 kb on + strand at 1903.323 kb on + strand at 1903.324 kb on - strand at 1903.324 kb on - strand at 1903.470 kb on + strand at 1903.471 kb on - strand at 1903.542 kb on - strand at 1903.620 kb on + strand at 1903.630 kb on + strand at 1903.631 kb on - strand at 1903.684 kb on + strand at 1903.684 kb on + strand at 1903.685 kb on - strand at 1903.685 kb on - strand at 1903.685 kb on - strand at 1903.745 kb on + strand at 1903.896 kb on + strand at 1904.061 kb on + strand, within PP_1705 at 1904.097 kb on + strand, within PP_1705 at 1904.149 kb on - strand, within PP_1705 at 1904.362 kb on + strand, within PP_1705 at 1904.363 kb on - strand, within PP_1705 at 1904.363 kb on - strand, within PP_1705 at 1904.363 kb on - strand, within PP_1705 at 1904.418 kb on + strand, within PP_1705 at 1904.419 kb on - strand, within PP_1705 at 1904.649 kb on + strand, within PP_1705 at 1904.898 kb on + strand, within PP_1705 at 1904.898 kb on + strand, within PP_1705 at 1904.899 kb on - strand, within PP_1705 at 1904.902 kb on - strand, within PP_1705 at 1904.919 kb on + strand, within PP_1705 at 1905.247 kb on - strand, within PP_1705 at 1905.453 kb on + strand at 1905.453 kb on + strand, within PP_1705 at 1905.454 kb on - strand, within PP_1705 at 1905.454 kb on - strand, within PP_1705 at 1905.454 kb on - strand, within PP_1705 at 1905.454 kb on - strand, within PP_1705 at 1905.454 kb on - strand at 1905.488 kb on - strand, within PP_1705 at 1905.541 kb on - strand, within PP_1705 at 1905.673 kb on + strand, within PP_1705 at 1905.674 kb on - strand, within PP_1705 at 1905.753 kb on + strand, within PP_1705 at 1905.753 kb on + strand, within PP_1705 at 1905.873 kb on + strand, within PP_1705 at 1905.949 kb on + strand, within PP_1705 at 1906.048 kb on - strand at 1906.129 kb on - strand at 1906.129 kb on - strand at 1906.129 kb on - strand at 1906.422 kb on - strand, within PP_1706 at 1906.448 kb on + strand, within PP_1706 at 1906.449 kb on - strand, within PP_1706 at 1906.449 kb on - strand, within PP_1706 at 1906.486 kb on + strand, within PP_1706 at 1906.486 kb on + strand, within PP_1706 at 1906.487 kb on - strand, within PP_1706 at 1906.547 kb on + strand, within PP_1706 at 1906.547 kb on + strand, within PP_1706 at 1906.729 kb on + strand at 1906.729 kb on + strand at 1906.730 kb on - strand at 1906.730 kb on - strand at 1906.789 kb on + strand at 1906.789 kb on + strand at 1906.789 kb on + strand at 1906.790 kb on - strand at 1906.793 kb on + strand at 1906.794 kb on - strand at 1906.875 kb on + strand at 1906.875 kb on + strand at 1906.875 kb on + strand at 1906.876 kb on - strand at 1906.908 kb on + strand, within PP_1707 at 1906.908 kb on + strand, within PP_1707 at 1907.022 kb on + strand, within PP_1707 at 1907.022 kb on + strand, within PP_1707 at 1907.022 kb on + strand, within PP_1707 at 1907.023 kb on - strand at 1907.023 kb on - strand, within PP_1707 at 1907.053 kb on + strand, within PP_1707 at 1907.199 kb on + strand, within PP_1707 at 1907.199 kb on + strand, within PP_1707 at 1907.209 kb on + strand, within PP_1707
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 1,902,855 + PP_1703 0.85 +0.6 1,902,933 - PP_1703 0.87 -0.5 1,903,061 + PP_1703 0.90 -0.5 1,903,167 + +0.0 1,903,167 + -1.1 1,903,168 - +0.1 1,903,171 - -0.0 1,903,254 + -0.0 1,903,254 + -0.2 1,903,254 + -0.6 1,903,254 + +0.2 1,903,254 + +0.3 1,903,255 - -1.0 1,903,255 - -0.3 1,903,255 - -0.0 1,903,255 - -0.9 1,903,255 - -0.1 1,903,317 + -0.8 1,903,317 + -0.6 1,903,317 + -0.6 1,903,318 - -0.3 1,903,318 - +0.5 1,903,323 + -0.3 1,903,323 + +0.0 1,903,323 + -1.1 1,903,323 + +0.6 1,903,323 + -0.2 1,903,324 - +0.1 1,903,324 - +0.3 1,903,470 + +0.0 1,903,471 - -0.2 1,903,542 - -1.9 1,903,620 + -1.3 1,903,630 + -1.9 1,903,631 - -2.7 1,903,684 + -2.3 1,903,684 + -2.6 1,903,685 - -2.0 1,903,685 - -2.4 1,903,685 - -2.3 1,903,745 + -3.7 1,903,896 + -2.7 1,904,061 + PP_1705 0.12 -3.5 1,904,097 + PP_1705 0.14 -3.1 1,904,149 - PP_1705 0.16 -2.3 1,904,362 + PP_1705 0.24 -2.5 1,904,363 - PP_1705 0.24 -1.8 1,904,363 - PP_1705 0.24 -2.2 1,904,363 - PP_1705 0.24 -3.6 1,904,418 + PP_1705 0.26 -3.1 1,904,419 - PP_1705 0.26 -2.3 1,904,649 + PP_1705 0.35 -2.3 1,904,898 + PP_1705 0.45 -2.3 1,904,898 + PP_1705 0.45 -4.4 1,904,899 - PP_1705 0.45 -3.1 1,904,902 - PP_1705 0.45 -3.0 1,904,919 + PP_1705 0.46 -2.8 1,905,247 - PP_1705 0.59 -2.5 1,905,453 + +0.3 1,905,453 + PP_1705 0.67 -2.5 1,905,454 - PP_1705 0.67 -4.0 1,905,454 - PP_1705 0.67 -2.5 1,905,454 - PP_1705 0.67 -2.9 1,905,454 - PP_1705 0.67 -0.6 1,905,454 - -0.7 1,905,488 - PP_1705 0.68 -3.6 1,905,541 - PP_1705 0.70 -3.1 1,905,673 + PP_1705 0.75 -3.9 1,905,674 - PP_1705 0.76 -2.6 1,905,753 + PP_1705 0.79 -2.2 1,905,753 + PP_1705 0.79 -1.9 1,905,873 + PP_1705 0.83 -1.6 1,905,949 + PP_1705 0.86 -3.9 1,906,048 - -2.0 1,906,129 - -1.5 1,906,129 - +0.6 1,906,129 - -0.7 1,906,422 - PP_1706 0.34 -2.5 1,906,448 + PP_1706 0.41 -1.5 1,906,449 - PP_1706 0.42 -2.3 1,906,449 - PP_1706 0.42 -3.6 1,906,486 + PP_1706 0.52 -4.4 1,906,486 + PP_1706 0.52 -1.4 1,906,487 - PP_1706 0.52 -2.1 1,906,547 + PP_1706 0.69 -2.4 1,906,547 + PP_1706 0.69 -2.9 1,906,729 + -0.4 1,906,729 + +0.5 1,906,730 - -0.4 1,906,730 - +0.1 1,906,789 + -0.7 1,906,789 + -0.2 1,906,789 + +0.2 1,906,790 - -0.6 1,906,793 + +0.2 1,906,794 - -0.1 1,906,875 + -0.1 1,906,875 + +0.6 1,906,875 + +0.8 1,906,876 - -0.2 1,906,908 + PP_1707 0.13 +0.1 1,906,908 + PP_1707 0.13 +0.5 1,907,022 + PP_1707 0.25 -1.4 1,907,022 + PP_1707 0.25 +0.1 1,907,022 + PP_1707 0.25 -0.5 1,907,023 - +1.2 1,907,023 - PP_1707 0.25 -0.2 1,907,053 + PP_1707 0.28 -0.1 1,907,199 + PP_1707 0.43 +0.4 1,907,199 + PP_1707 0.43 +0.5 1,907,209 + PP_1707 0.44 +0.1
Or see this region's nucleotide sequence