Strain Fitness in Pseudomonas putida KT2440 around PP_0081

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0079 and PP_0080 are separated by 121 nucleotidesPP_0080 and PP_0081 are separated by 13 nucleotidesPP_0081 and PP_0082 are separated by 120 nucleotidesPP_0082 and PP_0083 overlap by 4 nucleotides PP_0079: PP_0079 - putative transcriptional regulator, at 89,426 to 90,325 _0079 PP_0080: PP_0080 - conserved protein of unknown function, at 90,447 to 91,064 _0080 PP_0081: PP_0081 - conserved protein of unknown function, at 91,078 to 91,449 _0081 PP_0082: PP_0082 - tryptophan synthase alpha chain, at 91,570 to 92,379 _0082 PP_0083: PP_0083 - tryptophan synthase beta chain, at 92,376 to 93,593 _0083 Position (kb) 91 92Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 90.103 kb on + strand, within PP_0079at 90.103 kb on + strand, within PP_0079at 90.103 kb on + strand, within PP_0079at 90.104 kb on - strand, within PP_0079at 90.104 kb on - strand, within PP_0079at 90.107 kb on + strand, within PP_0079at 90.107 kb on + strand, within PP_0079at 90.107 kb on + strand, within PP_0079at 90.107 kb on + strand, within PP_0079at 90.108 kb on - strand, within PP_0079at 90.108 kb on - strand, within PP_0079at 90.108 kb on - strand, within PP_0079at 90.108 kb on - strand, within PP_0079at 90.108 kb on - strand, within PP_0079at 90.108 kb on - strand, within PP_0079at 90.109 kb on + strand, within PP_0079at 90.109 kb on + strand, within PP_0079at 90.109 kb on + strand, within PP_0079at 90.109 kb on + strand, within PP_0079at 90.109 kb on + strand, within PP_0079at 90.110 kb on - strand, within PP_0079at 90.110 kb on - strand, within PP_0079at 90.239 kb on + strandat 90.239 kb on + strandat 90.239 kb on + strandat 90.240 kb on - strandat 90.242 kb on + strandat 90.242 kb on + strandat 90.242 kb on + strandat 90.242 kb on + strandat 90.242 kb on + strandat 90.242 kb on + strandat 90.242 kb on + strandat 90.243 kb on - strandat 90.243 kb on - strandat 90.243 kb on - strandat 90.243 kb on - strandat 90.243 kb on - strandat 90.246 kb on + strandat 90.246 kb on + strandat 90.247 kb on - strandat 90.252 kb on + strandat 90.252 kb on + strandat 90.253 kb on - strandat 90.448 kb on + strandat 90.448 kb on + strandat 90.448 kb on + strandat 90.573 kb on - strand, within PP_0080at 90.595 kb on - strand, within PP_0080at 90.697 kb on + strand, within PP_0080at 90.698 kb on - strand, within PP_0080at 90.698 kb on - strand, within PP_0080at 90.698 kb on - strand, within PP_0080at 90.750 kb on + strand, within PP_0080at 90.750 kb on + strand, within PP_0080at 90.751 kb on - strand, within PP_0080at 90.751 kb on - strand, within PP_0080at 90.753 kb on - strand, within PP_0080at 90.753 kb on - strand, within PP_0080at 90.831 kb on + strand, within PP_0080at 91.113 kb on + strandat 91.114 kb on - strandat 91.136 kb on - strand, within PP_0081at 91.150 kb on + strand, within PP_0081at 91.151 kb on - strand, within PP_0081at 91.151 kb on - strand, within PP_0081at 91.153 kb on + strand, within PP_0081at 91.154 kb on - strand, within PP_0081at 91.346 kb on + strand, within PP_0081at 91.347 kb on - strand, within PP_0081at 91.347 kb on - strand, within PP_0081at 91.347 kb on - strand, within PP_0081at 91.347 kb on - strand, within PP_0081at 91.447 kb on + strandat 91.447 kb on + strandat 91.448 kb on - strandat 91.494 kb on + strandat 91.535 kb on - strandat 91.547 kb on - strandat 91.621 kb on + strandat 91.622 kb on - strandat 91.853 kb on + strand, within PP_0082at 91.853 kb on + strand, within PP_0082at 91.853 kb on + strand, within PP_0082at 91.854 kb on - strand, within PP_0082at 91.856 kb on + strand, within PP_0082at 92.072 kb on + strand, within PP_0082at 92.072 kb on + strand, within PP_0082at 92.072 kb on + strand, within PP_0082at 92.072 kb on + strand, within PP_0082at 92.072 kb on + strand, within PP_0082at 92.073 kb on - strand, within PP_0082at 92.073 kb on - strand, within PP_0082at 92.073 kb on - strand, within PP_0082at 92.073 kb on - strand, within PP_0082at 92.073 kb on - strand, within PP_0082at 92.073 kb on - strand, within PP_0082at 92.073 kb on - strand, within PP_0082at 92.073 kb on - strand, within PP_0082at 92.075 kb on + strand, within PP_0082at 92.423 kb on + strandat 92.424 kb on - strandat 92.424 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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90,103 + PP_0079 0.75 +0.3
90,103 + PP_0079 0.75 +0.5
90,103 + PP_0079 0.75 -0.1
90,104 - PP_0079 0.75 -0.2
90,104 - PP_0079 0.75 -0.8
90,107 + PP_0079 0.76 +0.4
90,107 + PP_0079 0.76 +0.0
90,107 + PP_0079 0.76 -0.1
90,107 + PP_0079 0.76 +0.4
90,108 - PP_0079 0.76 -0.1
90,108 - PP_0079 0.76 +0.4
90,108 - PP_0079 0.76 -0.1
90,108 - PP_0079 0.76 -0.6
90,108 - PP_0079 0.76 -0.1
90,108 - PP_0079 0.76 +0.2
90,109 + PP_0079 0.76 +0.1
90,109 + PP_0079 0.76 +0.8
90,109 + PP_0079 0.76 -0.1
90,109 + PP_0079 0.76 -0.3
90,109 + PP_0079 0.76 -0.2
90,110 - PP_0079 0.76 +0.3
90,110 - PP_0079 0.76 -1.6
90,239 + -0.9
90,239 + +0.3
90,239 + -0.6
90,240 - -0.5
90,242 + -0.8
90,242 + -0.7
90,242 + -1.1
90,242 + +0.1
90,242 + -0.6
90,242 + +0.7
90,242 + -0.5
90,243 - -0.5
90,243 - -0.3
90,243 - +0.2
90,243 - +0.0
90,243 - +0.2
90,246 + -0.3
90,246 + -0.4
90,247 - +0.2
90,252 + +0.2
90,252 + -0.2
90,253 - +0.2
90,448 + -0.1
90,448 + -0.3
90,448 + +1.0
90,573 - PP_0080 0.20 -0.4
90,595 - PP_0080 0.24 +0.4
90,697 + PP_0080 0.40 +0.2
90,698 - PP_0080 0.41 +0.4
90,698 - PP_0080 0.41 +1.1
90,698 - PP_0080 0.41 -0.1
90,750 + PP_0080 0.49 +0.7
90,750 + PP_0080 0.49 +0.3
90,751 - PP_0080 0.49 -0.4
90,751 - PP_0080 0.49 -0.7
90,753 - PP_0080 0.50 +0.0
90,753 - PP_0080 0.50 +0.9
90,831 + PP_0080 0.62 +0.0
91,113 + +0.8
91,114 - +0.7
91,136 - PP_0081 0.16 +0.2
91,150 + PP_0081 0.19 -0.1
91,151 - PP_0081 0.20 -0.1
91,151 - PP_0081 0.20 +0.3
91,153 + PP_0081 0.20 +0.2
91,154 - PP_0081 0.20 +0.1
91,346 + PP_0081 0.72 -0.2
91,347 - PP_0081 0.72 -0.1
91,347 - PP_0081 0.72 -0.1
91,347 - PP_0081 0.72 -0.2
91,347 - PP_0081 0.72 +0.9
91,447 + +0.0
91,447 + -0.1
91,448 - +0.6
91,494 + +0.0
91,535 - -0.0
91,547 - +0.5
91,621 + -3.8
91,622 - -3.7
91,853 + PP_0082 0.35 -2.9
91,853 + PP_0082 0.35 -3.2
91,853 + PP_0082 0.35 -3.3
91,854 - PP_0082 0.35 -3.1
91,856 + PP_0082 0.35 -2.4
92,072 + PP_0082 0.62 -3.5
92,072 + PP_0082 0.62 -4.4
92,072 + PP_0082 0.62 -3.6
92,072 + PP_0082 0.62 -2.6
92,072 + PP_0082 0.62 -3.3
92,073 - PP_0082 0.62 -3.8
92,073 - PP_0082 0.62 -3.7
92,073 - PP_0082 0.62 -3.1
92,073 - PP_0082 0.62 -3.3
92,073 - PP_0082 0.62 -3.6
92,073 - PP_0082 0.62 -3.5
92,073 - PP_0082 0.62 -3.4
92,073 - PP_0082 0.62 -3.9
92,075 + PP_0082 0.62 -3.1
92,423 + -2.1
92,424 - -3.1
92,424 - -1.6

Or see this region's nucleotide sequence