Experiment: LB_noSalt 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01490 and PS417_01495 are separated by 74 nucleotides PS417_01495 and PS417_01500 are separated by 13 nucleotides PS417_01500 and PS417_01505 are separated by 554 nucleotides
PS417_01490: PS417_01490 - ABC transporter permease, at 330,843 to 331,538
_01490
PS417_01495: PS417_01495 - amino acid ABC transporter, at 331,613 to 332,365
_01495
PS417_01500: PS417_01500 - amino acid transporter, at 332,379 to 333,152
_01500
PS417_01505: PS417_01505 - gamma-aminobutyrate transporter, at 333,707 to 335,098
_01505
Position (kb) 332
333
334 Strain fitness (log2 ratio) -2
-1
0
1
2 at 331.405 kb on + strand, within PS417_01490 at 331.406 kb on - strand, within PS417_01490 at 331.441 kb on - strand, within PS417_01490 at 331.635 kb on + strand at 331.635 kb on + strand at 331.635 kb on + strand at 331.636 kb on - strand at 331.636 kb on - strand at 331.656 kb on + strand at 331.656 kb on + strand at 331.657 kb on - strand at 331.752 kb on - strand, within PS417_01495 at 331.809 kb on + strand, within PS417_01495 at 331.818 kb on + strand, within PS417_01495 at 331.818 kb on + strand, within PS417_01495 at 331.818 kb on + strand, within PS417_01495 at 331.818 kb on + strand, within PS417_01495 at 331.819 kb on - strand, within PS417_01495 at 331.819 kb on - strand, within PS417_01495 at 331.819 kb on - strand, within PS417_01495 at 331.926 kb on + strand, within PS417_01495 at 331.926 kb on + strand, within PS417_01495 at 331.927 kb on - strand at 331.927 kb on - strand, within PS417_01495 at 332.041 kb on - strand, within PS417_01495 at 332.041 kb on - strand, within PS417_01495 at 332.160 kb on + strand, within PS417_01495 at 332.160 kb on + strand, within PS417_01495 at 332.160 kb on + strand, within PS417_01495 at 332.160 kb on + strand, within PS417_01495 at 332.160 kb on + strand, within PS417_01495 at 332.161 kb on - strand, within PS417_01495 at 332.161 kb on - strand, within PS417_01495 at 332.161 kb on - strand, within PS417_01495 at 332.161 kb on - strand, within PS417_01495 at 332.488 kb on + strand, within PS417_01500 at 332.573 kb on + strand, within PS417_01500 at 332.573 kb on + strand, within PS417_01500 at 332.573 kb on + strand, within PS417_01500 at 332.574 kb on - strand, within PS417_01500 at 332.574 kb on - strand, within PS417_01500 at 332.574 kb on - strand, within PS417_01500 at 332.636 kb on + strand, within PS417_01500 at 332.637 kb on - strand, within PS417_01500 at 333.077 kb on + strand at 333.087 kb on + strand at 333.103 kb on + strand at 333.104 kb on - strand at 333.218 kb on + strand at 333.218 kb on + strand at 333.219 kb on - strand at 333.219 kb on - strand at 333.219 kb on - strand at 333.219 kb on - strand at 333.219 kb on - strand at 333.219 kb on - strand at 333.223 kb on + strand at 333.223 kb on + strand at 333.224 kb on - strand at 333.224 kb on - strand at 333.224 kb on - strand at 333.427 kb on - strand at 333.427 kb on - strand at 333.513 kb on + strand at 333.513 kb on + strand at 333.712 kb on + strand at 333.712 kb on + strand at 333.715 kb on + strand at 333.715 kb on + strand at 333.716 kb on - strand at 333.716 kb on - strand at 333.716 kb on - strand at 333.947 kb on + strand, within PS417_01505 at 333.948 kb on - strand, within PS417_01505 at 333.948 kb on - strand, within PS417_01505 at 333.948 kb on - strand, within PS417_01505 at 333.948 kb on - strand, within PS417_01505 at 333.998 kb on + strand, within PS417_01505 at 333.998 kb on + strand, within PS417_01505 at 333.999 kb on - strand, within PS417_01505 at 333.999 kb on - strand, within PS417_01505 at 334.105 kb on + strand, within PS417_01505
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt 30C remove 331,405 + PS417_01490 0.81 +0.3 331,406 - PS417_01490 0.81 -0.9 331,441 - PS417_01490 0.86 -1.0 331,635 + +0.3 331,635 + -0.2 331,635 + +0.3 331,636 - -0.1 331,636 - -0.3 331,656 + -0.5 331,656 + -0.2 331,657 - -0.6 331,752 - PS417_01495 0.18 -0.1 331,809 + PS417_01495 0.26 +0.7 331,818 + PS417_01495 0.27 -0.1 331,818 + PS417_01495 0.27 -0.1 331,818 + PS417_01495 0.27 +0.0 331,818 + PS417_01495 0.27 -0.2 331,819 - PS417_01495 0.27 +0.1 331,819 - PS417_01495 0.27 -0.5 331,819 - PS417_01495 0.27 -2.3 331,926 + PS417_01495 0.42 -0.3 331,926 + PS417_01495 0.42 -0.7 331,927 - -0.7 331,927 - PS417_01495 0.42 +0.5 332,041 - PS417_01495 0.57 +0.1 332,041 - PS417_01495 0.57 -0.8 332,160 + PS417_01495 0.73 -0.4 332,160 + PS417_01495 0.73 -0.0 332,160 + PS417_01495 0.73 +0.4 332,160 + PS417_01495 0.73 -0.2 332,160 + PS417_01495 0.73 -0.7 332,161 - PS417_01495 0.73 -0.3 332,161 - PS417_01495 0.73 -0.4 332,161 - PS417_01495 0.73 +0.6 332,161 - PS417_01495 0.73 +0.1 332,488 + PS417_01500 0.14 -0.2 332,573 + PS417_01500 0.25 +0.3 332,573 + PS417_01500 0.25 +0.1 332,573 + PS417_01500 0.25 +1.2 332,574 - PS417_01500 0.25 +0.3 332,574 - PS417_01500 0.25 -0.1 332,574 - PS417_01500 0.25 -0.1 332,636 + PS417_01500 0.33 -0.1 332,637 - PS417_01500 0.33 -0.2 333,077 + -0.1 333,087 + +0.2 333,103 + -0.1 333,104 - -0.1 333,218 + -0.2 333,218 + +0.7 333,219 - -0.5 333,219 - -0.3 333,219 - +0.2 333,219 - -1.1 333,219 - +0.9 333,219 - -1.1 333,223 + +2.0 333,223 + +0.1 333,224 - -0.2 333,224 - -0.0 333,224 - +0.3 333,427 - +0.2 333,427 - -0.1 333,513 + +1.7 333,513 + +0.8 333,712 + +0.1 333,712 + +0.4 333,715 + -0.1 333,715 + +0.3 333,716 - -0.4 333,716 - +0.5 333,716 - -0.1 333,947 + PS417_01505 0.17 -0.5 333,948 - PS417_01505 0.17 +0.3 333,948 - PS417_01505 0.17 -0.1 333,948 - PS417_01505 0.17 +0.3 333,948 - PS417_01505 0.17 +0.4 333,998 + PS417_01505 0.21 +0.4 333,998 + PS417_01505 0.21 +0.3 333,999 - PS417_01505 0.21 -0.2 333,999 - PS417_01505 0.21 -0.2 334,105 + PS417_01505 0.29 +0.0
Or see this region's nucleotide sequence