Strain Fitness in Escherichia coli BW25113 around b3500

Experiment: LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
3,643,333	+				-0.2
3,643,341	-				-0.0
3,643,351	-				-0.3
3,643,399	+				+0.5
3,643,399	+				+0.4
3,643,407	-				+0.4
3,643,407	-				-1.0
3,643,409	+				+1.7
3,643,435	-				-0.2
3,643,435	-				-0.7
3,643,435	-				+0.2
3,643,468	+				-0.2
3,643,537	-	yhiR	b3499	0.15	+0.0
3,643,541	-	yhiR	b3499	0.16	+0.7
3,643,541	-	yhiR	b3499	0.16	+0.8
3,643,603	+	yhiR	b3499	0.23	-0.1
3,643,603	+	yhiR	b3499	0.23	-0.6
3,643,723	+	yhiR	b3499	0.37	+0.0
3,643,745	+	yhiR	b3499	0.40	+0.6
3,643,753	-	yhiR	b3499	0.41	-0.2
3,643,941	-	yhiR	b3499	0.63	-0.4
3,643,955	+	yhiR	b3499	0.65	-0.2
3,643,987	+	yhiR	b3499	0.69	+0.2
3,643,992	+	yhiR	b3499	0.69	-0.4
3,644,036	+	yhiR	b3499	0.74	+0.0
3,644,086	+	yhiR	b3499	0.80	+0.2
3,644,086	+	yhiR	b3499	0.80	-0.1
3,644,092	-	yhiR	b3499	0.81	-0.1
3,644,110	-	yhiR	b3499	0.83	-0.0
3,644,110	-	yhiR	b3499	0.83	-0.3
3,644,116	-	yhiR	b3499	0.84	-0.1
3,644,182	+				+0.4
3,644,224	+				+0.1
3,644,232	-				-0.0
3,644,233	-				+0.1
3,644,233	-				-0.3
3,644,280	-				+0.2
3,644,291	-				-0.2
3,644,309	-				-0.5
3,644,322	-				-0.7
3,644,391	+				-0.8
3,644,391	+				+0.2
3,644,519	-	gor	b3500	0.15	-1.8
3,644,566	-	gor	b3500	0.18	+1.7
3,644,743	+				+1.7
3,645,079	-	gor	b3500	0.56	-1.2
3,645,079	-	gor	b3500	0.56	-0.8
3,645,348	+	gor	b3500	0.76	+0.2
3,645,453	+	gor	b3500	0.84	-0.2
3,645,690	+				-0.1
3,645,755	+	dinQ	b4613	0.21	-0.0
3,645,781	+	dinQ	b4613	0.41	+0.7
3,645,862	+				-0.0
3,645,898	+				-0.7
3,645,898	+				+0.3
3,645,918	-				+0.3
3,645,930	+				+0.2
3,645,956	+				+0.5
3,645,976	+				+0.6
3,646,094	+				-1.5
3,646,100	+				+0.7
3,646,100	+				+0.8
3,646,107	-				+0.6
3,646,117	-				+0.1
3,646,234	+				+0.3
3,646,238	+				+0.2
3,646,249	+				+0.6
3,646,291	+				-0.2
3,646,325	-				-0.2
3,646,325	-				-0.4
3,646,338	-				-2.0
3,646,367	-				+0.3
3,646,560	+				+0.2
3,646,602	+	arsR	b3501	0.14	-0.1
3,646,655	+	arsR	b3501	0.29	+0.4
3,646,655	+	arsR	b3501	0.29	+0.1
3,646,663	-	arsR	b3501	0.32	-1.4
3,646,663	-	arsR	b3501	0.32	-0.5
3,646,663	-	arsR	b3501	0.32	-0.5
3,646,663	-	arsR	b3501	0.32	-0.5
3,646,666	-	arsR	b3501	0.32	+0.2
3,646,666	-	arsR	b3501	0.32	-0.2
3,646,674	-	arsR	b3501	0.35	+1.3