Strain Fitness in Escherichia coli BW25113 around b4573

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
1,292,652	+				+0.8
1,292,661	+				-1.3
1,292,661	+				+0.5
1,292,665	-				+0.5
1,292,665	-				-0.5
1,292,672	-				+1.1
1,292,682	-				+0.1
1,292,682	-				+1.1
1,292,700	+				-0.9
1,292,735	-				+1.6
1,292,738	+				+0.3
1,292,738	+				+1.6
1,292,739	+				+0.3
1,292,739	+				+0.9
1,292,749	-				+2.1
1,292,794	+				-0.6
1,292,794	+				-1.8
1,292,797	-				-1.3
1,292,798	+				+0.6
1,292,862	-	tdk	b1238	0.18	+2.6
1,292,896	-	tdk	b1238	0.24	+1.1
1,292,898	+	tdk	b1238	0.24	-3.3
1,292,909	+	tdk	b1238	0.26	-0.6
1,292,944	-	tdk	b1238	0.31	-0.3
1,292,957	+	tdk	b1238	0.33	-2.1
1,293,067	+	tdk	b1238	0.51	-2.4
1,293,067	+	tdk	b1238	0.51	-1.8
1,293,146	-	tdk	b1238	0.64	-1.3
1,293,192	+	tdk	b1238	0.72	+0.3
1,293,200	-	tdk	b1238	0.73	-0.5
1,293,209	+	tdk	b1238	0.74	+0.1
1,293,211	-	tdk	b1238	0.75	-0.7
1,293,214	-	tdk	b1238	0.75	-1.3
1,293,217	-	tdk	b1238	0.76	+0.1
1,293,217	-	tdk	b1238	0.76	+0.5
1,293,224	-	tdk	b1238	0.77	-1.5
1,293,238	+	tdk	b1238	0.79	+0.5
1,293,245	-	tdk	b1238	0.80	+0.3
1,293,245	-	tdk	b1238	0.80	+0.3
1,293,270	+	tdk	b1238	0.84	-0.7
1,293,285	+	tdk	b1238	0.87	+0.5
1,293,324	-				-1.9
1,293,384	+				-1.3
1,293,384	+				+0.3
1,293,397	+				-0.4
1,293,471	+				+0.2
1,293,473	+				+0.5
1,293,473	+				-0.4
1,293,479	-				+0.4
1,293,570	+				-1.7
1,293,576	+				-0.2
1,293,576	+				-1.1
1,293,584	-				-0.2
1,293,637	+				+0.5
1,293,637	+				-0.6
1,293,645	-				+0.5
1,293,652	+				+0.1
1,293,750	+	insZ	b4573	0.18	-1.5
1,293,800	-	insZ	b4573	0.27	-0.0
1,293,965	+	insZ	b4573	0.56	-0.5
1,294,028	-	insZ	b4573	0.67	-0.4
1,294,043	-	insZ	b4573	0.69	-0.1
1,294,043	-	insZ	b4573	0.69	+0.6
1,294,144	-	insZ	b4573	0.87	-3.0
1,294,175	-				+0.3
1,294,207	+				-0.1
1,294,444	-				+0.4
1,294,479	+				+0.1
1,294,487	-				+1.0
1,294,487	-				-1.1
1,294,504	-				-0.3
1,294,504	-				-1.2
1,294,512	+				-0.3
1,294,770	+				-0.2
1,294,793	-				-0.3
1,294,928	-				-2.0
1,294,933	-				-0.2
1,294,971	-	adhE	b1241	0.11	-0.1
1,294,979	-	adhE	b1241	0.12	+0.0
1,294,998	-	adhE	b1241	0.12	+0.5
1,295,050	-	adhE	b1241	0.14	-0.5
1,295,128	-	adhE	b1241	0.17	-0.1
1,295,128	-	adhE	b1241	0.17	-0.1
1,295,139	+	adhE	b1241	0.18	-0.2
1,295,139	+	adhE	b1241	0.18	-1.1
1,295,179	+	adhE	b1241	0.19	-0.1