Strain Fitness in Escherichia coli BW25113 around b2385

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
2,502,656	-	ypdE	b2384	0.12	+0.2
2,502,774	+	ypdE	b2384	0.23	+1.1
2,502,774	+	ypdE	b2384	0.23	-0.5
2,503,000	+	ypdE	b2384	0.45	-0.0
2,503,000	+	ypdE	b2384	0.45	-1.1
2,503,120	+	ypdE	b2384	0.57	+0.2
2,503,260	+	ypdE	b2384	0.70	-0.2
2,503,260	+	ypdE	b2384	0.70	+0.0
2,503,268	-	ypdE	b2384	0.71	-0.2
2,503,268	-	ypdE	b2384	0.71	+0.2
2,503,268	-	ypdE	b2384	0.71	-0.2
2,503,386	-	ypdE	b2384	0.82	+0.9
2,503,386	-	ypdE	b2384	0.82	-0.2
2,503,409	-	ypdE	b2384	0.84	-0.8
2,503,711	-	ypdF	b2385	0.13	-0.2
2,503,814	-	ypdF	b2385	0.23	-1.0
2,503,814	-	ypdF	b2385	0.23	-1.3
2,503,814	-	ypdF	b2385	0.23	-0.1
2,504,007	-	ypdF	b2385	0.40	+0.7
2,504,097	+	ypdF	b2385	0.49	-0.1
2,504,097	+	ypdF	b2385	0.49	+0.0
2,504,187	+	ypdF	b2385	0.57	-0.2
2,504,205	+	ypdF	b2385	0.59	+0.3
2,504,261	+	ypdF	b2385	0.64	+0.4
2,504,472	+	ypdF	b2385	0.83	+0.2
2,504,568	+				-0.2
2,504,808	+	ypdG	b2386	0.11	+0.2
2,504,809	-	ypdG	b2386	0.11	+0.2
2,504,809	-	ypdG	b2386	0.11	-0.7
2,504,811	-	ypdG	b2386	0.11	-1.1
2,504,830	+	ypdG	b2386	0.13	-0.3
2,504,866	+	ypdG	b2386	0.16	-0.2
2,504,888	-	ypdG	b2386	0.18	+0.1
2,504,888	-	ypdG	b2386	0.18	-1.9
2,504,967	+	ypdG	b2386	0.24	+0.3
2,504,967	+	ypdG	b2386	0.24	-0.4
2,505,076	+	ypdG	b2386	0.33	-0.2
2,505,092	-	ypdG	b2386	0.34	-0.3
2,505,107	+	ypdG	b2386	0.35	-0.6
2,505,145	-	ypdG	b2386	0.38	-0.1
2,505,243	+	ypdG	b2386	0.46	-0.1
2,505,350	-	ypdG	b2386	0.55	-0.3
2,505,408	-	ypdG	b2386	0.59	+0.3
2,505,468	-	ypdG	b2386	0.64	-0.0
2,505,473	-	ypdG	b2386	0.64	-0.1
2,505,504	-	ypdG	b2386	0.67	+0.2
2,505,639	+	ypdG	b2386	0.78	-0.2
2,505,648	-	ypdG	b2386	0.78	+2.0
2,505,648	-	ypdG	b2386	0.78	+1.0