Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yahB and yahC are separated by 91 nucleotides yahC and yahD are separated by 257 nucleotides yahD and yahE are separated by 39 nucleotides
b0316: yahB - predicted DNA-bindng transcriptional regulator (NCBI), at 332,725 to 333,657
yahB
b0317: yahC - predicted inner membrane protein (NCBI), at 333,749 to 334,246
yahC
b0318: yahD - predicted transcriptional regulator with ankyrin domain (NCBI), at 334,504 to 335,109
yahD
b0319: yahE - hypothetical protein (NCBI), at 335,149 to 336,012
yahE
Position (kb) 333
334
335 Strain fitness (log2 ratio) -2
-1
0
1
2 at 332.754 kb on - strand at 332.754 kb on - strand at 332.760 kb on - strand at 332.762 kb on + strand at 332.800 kb on + strand at 332.808 kb on - strand at 332.827 kb on - strand, within yahB at 332.843 kb on - strand, within yahB at 332.852 kb on - strand, within yahB at 332.852 kb on - strand, within yahB at 332.871 kb on - strand, within yahB at 332.997 kb on + strand, within yahB at 333.054 kb on - strand, within yahB at 333.054 kb on - strand, within yahB at 333.121 kb on + strand, within yahB at 333.126 kb on + strand, within yahB at 333.189 kb on + strand, within yahB at 333.189 kb on + strand, within yahB at 333.192 kb on + strand, within yahB at 333.192 kb on + strand, within yahB at 333.201 kb on - strand, within yahB at 333.253 kb on + strand, within yahB at 333.259 kb on - strand, within yahB at 333.261 kb on + strand, within yahB at 333.279 kb on + strand, within yahB at 333.333 kb on - strand, within yahB at 333.334 kb on - strand, within yahB at 333.346 kb on - strand, within yahB at 333.383 kb on - strand, within yahB at 333.383 kb on - strand, within yahB at 333.484 kb on + strand, within yahB at 333.485 kb on + strand, within yahB at 333.485 kb on + strand, within yahB at 333.486 kb on + strand, within yahB at 333.505 kb on - strand, within yahB at 333.505 kb on - strand, within yahB at 333.509 kb on + strand, within yahB at 333.515 kb on - strand, within yahB at 333.515 kb on - strand, within yahB at 333.521 kb on - strand, within yahB at 333.522 kb on - strand, within yahB at 333.526 kb on + strand, within yahB at 333.527 kb on + strand, within yahB at 333.528 kb on + strand, within yahB at 333.541 kb on + strand, within yahB at 333.546 kb on + strand, within yahB at 333.550 kb on - strand, within yahB at 333.560 kb on - strand, within yahB at 333.587 kb on + strand at 333.679 kb on - strand at 333.711 kb on - strand at 333.852 kb on + strand, within yahC at 333.852 kb on + strand, within yahC at 333.936 kb on - strand, within yahC at 333.943 kb on + strand, within yahC at 333.956 kb on + strand, within yahC at 333.956 kb on + strand, within yahC at 333.958 kb on + strand, within yahC at 333.964 kb on - strand, within yahC at 333.971 kb on - strand at 333.971 kb on - strand, within yahC at 333.972 kb on - strand, within yahC at 333.972 kb on - strand, within yahC at 333.997 kb on + strand, within yahC at 334.048 kb on - strand, within yahC at 334.090 kb on + strand, within yahC at 334.141 kb on - strand, within yahC at 334.186 kb on - strand, within yahC at 334.238 kb on - strand at 334.240 kb on + strand at 334.260 kb on + strand at 334.260 kb on + strand at 334.260 kb on + strand at 334.260 kb on + strand at 334.260 kb on + strand at 334.281 kb on + strand at 334.282 kb on + strand at 334.282 kb on + strand at 334.306 kb on - strand at 334.323 kb on + strand at 334.323 kb on + strand at 334.330 kb on + strand at 334.330 kb on + strand at 334.361 kb on + strand at 334.361 kb on + strand at 334.369 kb on - strand at 334.459 kb on + strand at 334.459 kb on + strand at 334.497 kb on + strand at 334.532 kb on + strand at 334.532 kb on + strand at 334.541 kb on + strand at 334.543 kb on + strand at 334.543 kb on + strand at 334.548 kb on + strand at 334.548 kb on + strand at 334.567 kb on + strand, within yahD at 334.782 kb on + strand, within yahD at 334.790 kb on - strand, within yahD at 334.791 kb on - strand, within yahD at 334.791 kb on - strand, within yahD at 334.805 kb on - strand, within yahD at 334.805 kb on - strand, within yahD at 334.809 kb on - strand, within yahD at 334.826 kb on + strand, within yahD at 334.828 kb on - strand, within yahD at 334.828 kb on - strand, within yahD at 334.835 kb on - strand, within yahD at 334.839 kb on - strand, within yahD at 334.895 kb on + strand, within yahD at 334.903 kb on - strand, within yahD at 334.903 kb on - strand, within yahD at 334.903 kb on - strand, within yahD at 334.908 kb on + strand, within yahD at 334.908 kb on + strand, within yahD at 334.908 kb on - strand, within yahD at 334.911 kb on + strand at 334.911 kb on + strand, within yahD at 334.927 kb on - strand, within yahD at 334.969 kb on - strand, within yahD at 334.969 kb on - strand, within yahD at 334.986 kb on + strand, within yahD at 334.998 kb on + strand, within yahD at 335.009 kb on + strand, within yahD at 335.009 kb on + strand, within yahD at 335.009 kb on + strand, within yahD at 335.009 kb on + strand, within yahD at 335.017 kb on - strand, within yahD at 335.017 kb on - strand, within yahD at 335.058 kb on + strand at 335.058 kb on + strand at 335.088 kb on + strand at 335.089 kb on - strand at 335.118 kb on - strand at 335.122 kb on + strand at 335.122 kb on + strand at 335.181 kb on + strand at 335.214 kb on + strand at 335.214 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 332,754 - +1.4 332,754 - +0.7 332,760 - +0.5 332,762 + +1.1 332,800 + +0.2 332,808 - -0.1 332,827 - yahB b0316 0.11 -0.1 332,843 - yahB b0316 0.13 -0.0 332,852 - yahB b0316 0.14 -0.1 332,852 - yahB b0316 0.14 -0.8 332,871 - yahB b0316 0.16 -0.1 332,997 + yahB b0316 0.29 +0.7 333,054 - yahB b0316 0.35 -0.2 333,054 - yahB b0316 0.35 +0.3 333,121 + yahB b0316 0.42 +0.3 333,126 + yahB b0316 0.43 -0.4 333,189 + yahB b0316 0.50 +0.1 333,189 + yahB b0316 0.50 +0.5 333,192 + yahB b0316 0.50 -1.1 333,192 + yahB b0316 0.50 -0.8 333,201 - yahB b0316 0.51 +0.0 333,253 + yahB b0316 0.57 +1.2 333,259 - yahB b0316 0.57 -0.0 333,261 + yahB b0316 0.57 -0.1 333,279 + yahB b0316 0.59 -0.1 333,333 - yahB b0316 0.65 +0.0 333,334 - yahB b0316 0.65 -0.5 333,346 - yahB b0316 0.67 +0.6 333,383 - yahB b0316 0.71 -1.8 333,383 - yahB b0316 0.71 +1.1 333,484 + yahB b0316 0.81 +0.5 333,485 + yahB b0316 0.81 +0.6 333,485 + yahB b0316 0.81 -0.6 333,486 + yahB b0316 0.82 +0.4 333,505 - yahB b0316 0.84 -0.2 333,505 - yahB b0316 0.84 -0.9 333,509 + yahB b0316 0.84 +0.2 333,515 - yahB b0316 0.85 +0.5 333,515 - yahB b0316 0.85 -0.7 333,521 - yahB b0316 0.85 -0.2 333,522 - yahB b0316 0.85 +0.6 333,526 + yahB b0316 0.86 -0.5 333,527 + yahB b0316 0.86 +0.1 333,528 + yahB b0316 0.86 -0.1 333,541 + yahB b0316 0.87 +0.4 333,546 + yahB b0316 0.88 +0.4 333,550 - yahB b0316 0.88 +0.0 333,560 - yahB b0316 0.89 -0.7 333,587 + +0.6 333,679 - +0.7 333,711 - +0.1 333,852 + yahC b0317 0.21 +0.1 333,852 + yahC b0317 0.21 -1.9 333,936 - yahC b0317 0.38 -0.3 333,943 + yahC b0317 0.39 +0.2 333,956 + yahC b0317 0.42 -0.8 333,956 + yahC b0317 0.42 -0.4 333,958 + yahC b0317 0.42 +0.6 333,964 - yahC b0317 0.43 -0.4 333,971 - -0.9 333,971 - yahC b0317 0.45 +0.5 333,972 - yahC b0317 0.45 -1.4 333,972 - yahC b0317 0.45 +0.6 333,997 + yahC b0317 0.50 +0.0 334,048 - yahC b0317 0.60 -0.5 334,090 + yahC b0317 0.68 -0.1 334,141 - yahC b0317 0.79 +0.5 334,186 - yahC b0317 0.88 +0.5 334,238 - +0.1 334,240 + +0.7 334,260 + +0.5 334,260 + -0.5 334,260 + -0.4 334,260 + +0.1 334,260 + -1.1 334,281 + +0.2 334,282 + +0.6 334,282 + +1.0 334,306 - +0.3 334,323 + +0.5 334,323 + -0.2 334,330 + -0.2 334,330 + +0.6 334,361 + +0.3 334,361 + -0.1 334,369 - +0.3 334,459 + +1.6 334,459 + +0.4 334,497 + +0.2 334,532 + +0.6 334,532 + -0.0 334,541 + -1.3 334,543 + -1.4 334,543 + -0.9 334,548 + -0.4 334,548 + +0.1 334,567 + yahD b0318 0.10 +0.1 334,782 + yahD b0318 0.46 +0.1 334,790 - yahD b0318 0.47 +1.1 334,791 - yahD b0318 0.47 -0.3 334,791 - yahD b0318 0.47 +0.1 334,805 - yahD b0318 0.50 -0.5 334,805 - yahD b0318 0.50 +0.3 334,809 - yahD b0318 0.50 -1.3 334,826 + yahD b0318 0.53 +2.1 334,828 - yahD b0318 0.53 -0.9 334,828 - yahD b0318 0.53 -0.9 334,835 - yahD b0318 0.55 -0.3 334,839 - yahD b0318 0.55 -0.8 334,895 + yahD b0318 0.65 -0.5 334,903 - yahD b0318 0.66 +0.8 334,903 - yahD b0318 0.66 -0.1 334,903 - yahD b0318 0.66 -1.9 334,908 + yahD b0318 0.67 -0.3 334,908 + yahD b0318 0.67 -0.9 334,908 - yahD b0318 0.67 +2.1 334,911 + -0.3 334,911 + yahD b0318 0.67 +2.1 334,927 - yahD b0318 0.70 -0.8 334,969 - yahD b0318 0.77 -0.4 334,969 - yahD b0318 0.77 -1.9 334,986 + yahD b0318 0.80 +0.4 334,998 + yahD b0318 0.82 -0.1 335,009 + yahD b0318 0.83 -0.6 335,009 + yahD b0318 0.83 +0.9 335,009 + yahD b0318 0.83 +0.9 335,009 + yahD b0318 0.83 +0.1 335,017 - yahD b0318 0.85 -0.1 335,017 - yahD b0318 0.85 +2.6 335,058 + -0.1 335,058 + -1.4 335,088 + +0.1 335,089 - +1.1 335,118 - -0.9 335,122 + -0.5 335,122 + +0.0 335,181 + -0.7 335,214 + -0.0 335,214 + -0.3
Or see this region's nucleotide sequence