Strain Fitness in Escherichia coli BW25113 around b2688

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
2,811,906	-	emrB	b2686	0.82	+0.2
2,811,983	+	emrB	b2686	0.87	-1.2
2,811,983	+	emrB	b2686	0.87	-0.6
2,812,033	-				-0.5
2,812,033	-				-1.1
2,812,113	-				-0.5
2,812,113	-				+0.5
2,812,127	+				-0.2
2,812,150	+				-0.5
2,812,150	+				+0.4
2,812,178	-				-0.5
2,812,327	+	luxS	b2687	0.17	+0.2
2,812,334	-	luxS	b2687	0.18	-0.0
2,812,375	-	luxS	b2687	0.26	+0.1
2,812,383	-	luxS	b2687	0.28	-0.0
2,812,383	-	luxS	b2687	0.28	+0.2
2,812,467	+	luxS	b2687	0.44	-0.3
2,812,470	-	luxS	b2687	0.45	-1.6
2,812,525	+	luxS	b2687	0.55	-0.8
2,812,525	+	luxS	b2687	0.55	+0.5
2,812,534	-	luxS	b2687	0.57	-0.2
2,812,541	-	luxS	b2687	0.58	-0.3
2,812,547	-	luxS	b2687	0.59	-0.2
2,812,585	+	luxS	b2687	0.67	-0.4
2,812,604	-	luxS	b2687	0.71	-0.4
2,812,604	-	luxS	b2687	0.71	-0.9
2,812,637	-	luxS	b2687	0.77	+0.0
2,812,719	+				+0.1
2,812,819	-				+0.1
2,813,178	-	gshA	b2688	0.18	+4.4
2,813,297	+	gshA	b2688	0.25	+3.9
2,813,297	+	gshA	b2688	0.25	+4.4
2,813,320	-	gshA	b2688	0.27	+4.0
2,813,347	-	gshA	b2688	0.28	+4.0
2,813,392	+	gshA	b2688	0.31	+4.3
2,813,417	+	gshA	b2688	0.33	+3.8
2,813,471	-	gshA	b2688	0.36	+3.8
2,813,485	-	gshA	b2688	0.37	+3.6
2,813,616	+	gshA	b2688	0.46	+4.0
2,813,624	-	gshA	b2688	0.46	+3.9
2,813,779	+	gshA	b2688	0.56	+3.9
2,813,812	-	gshA	b2688	0.58	+4.3
2,813,878	-	gshA	b2688	0.62	+4.2
2,813,881	-	gshA	b2688	0.63	+3.7
2,813,915	-	gshA	b2688	0.65	+3.4
2,813,915	-	gshA	b2688	0.65	+3.9
2,814,108	-	gshA	b2688	0.77	+4.0
2,814,115	+	gshA	b2688	0.78	+4.1
2,814,131	-	gshA	b2688	0.79	+3.6
2,814,131	-	gshA	b2688	0.79	+4.1
2,814,139	+	gshA	b2688	0.79	+4.7
2,814,139	+	gshA	b2688	0.79	+4.2
2,814,144	+	gshA	b2688	0.80	+3.4
2,814,191	+	gshA	b2688	0.83	+3.8
2,814,233	+	gshA	b2688	0.85	+4.5
2,814,233	+	gshA	b2688	0.85	+3.7
2,814,303	+	gshA	b2688	0.90	+4.0
2,814,308	+				+3.3
2,814,308	+				+3.8
2,814,316	-				+3.9
2,814,331	-				+3.8
2,814,373	+				+4.5
2,814,552	+				+1.1
2,814,552	+				+1.2
2,814,709	-	yqaA	b2689	0.41	+0.7
2,814,709	-	yqaA	b2689	0.41	-0.1
2,814,745	-	yqaA	b2689	0.49	-0.8
2,814,798	-	yqaA	b2689	0.62	-0.8
2,814,900	+	yqaA	b2689	0.85	+0.2
2,814,900	+	yqaA	b2689	0.85	+1.0
2,814,981	-				-0.2
2,814,981	-				+0.2
2,814,983	+				-0.5
2,814,983	+				-1.2
2,814,991	+				-0.4
2,815,035	+	yqaB	b2690	0.13	+0.1
2,815,035	+	yqaB	b2690	0.13	-0.2
2,815,051	+	yqaB	b2690	0.16	-0.7
2,815,059	+	yqaB	b2690	0.18	+0.0
2,815,152	+	yqaB	b2690	0.34	-0.1
2,815,153	+	yqaB	b2690	0.34	+0.1
2,815,194	-	yqaB	b2690	0.41	-1.2
2,815,279	+	yqaB	b2690	0.56	+0.1
2,815,381	-	yqaB	b2690	0.74	-1.2
2,815,430	+	yqaB	b2690	0.83	+0.2
2,815,430	+	yqaB	b2690	0.83	-0.3
2,815,430	+	yqaB	b2690	0.83	+0.3
2,815,460	+	yqaB	b2690	0.88	-0.2