Strain Fitness in Escherichia coli BW25113 around b2019

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
2,087,364	-	yoeB	b4539	0.51	+0.1
2,087,506	-				+0.8
2,087,506	-				+1.6
2,087,544	+	yefM	b2017	0.23	+1.2
2,087,642	-	yefM	b2017	0.62	+1.6
2,087,867	+				+0.4
2,088,113	-				+0.3
2,088,203	-				-0.3
2,088,203	-				+0.6
2,088,316	+	hisG	b2019	0.11	-0.8
2,088,484	-	hisG	b2019	0.30	-0.2
2,088,602	+	hisG	b2019	0.43	-1.2
2,088,610	-	hisG	b2019	0.44	-0.6
2,088,610	-	hisG	b2019	0.44	-0.5
2,088,657	-	hisG	b2019	0.49	+0.2
2,088,681	-	hisG	b2019	0.52	+0.1
2,088,859	+	hisG	b2019	0.71	-0.2
2,088,900	+	hisG	b2019	0.76	-0.3
2,088,900	+	hisG	b2019	0.76	-0.4
2,089,029	+				-0.5
2,089,104	+				-0.3
2,089,133	-				+0.0
2,089,155	-				-0.3
2,089,187	-				-0.4
2,089,234	-				-0.8
2,089,234	-				-0.2
2,089,267	+	hisD	b2020	0.11	-0.5
2,089,326	+	hisD	b2020	0.16	-1.1
2,089,419	-	hisD	b2020	0.23	-0.4
2,089,504	+	hisD	b2020	0.29	+0.2
2,089,605	-	hisD	b2020	0.37	+0.0
2,089,755	-	hisD	b2020	0.49	+0.1
2,089,776	+	hisD	b2020	0.50	-0.4
2,089,844	+	hisD	b2020	0.55	+0.4
2,089,929	-	hisD	b2020	0.62	-0.1
2,089,929	-	hisD	b2020	0.62	-0.4
2,090,018	-	hisD	b2020	0.69	+0.3
2,090,018	-	hisD	b2020	0.69	+0.3
2,090,075	-	hisD	b2020	0.73	-2.4