Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fhuA and fhuC are separated by 50 nucleotides fhuC and fhuD overlap by 1 nucleotides fhuD and fhuB overlap by 4 nucleotides
b0150: fhuA - ferrichrome outer membrane transporter (NCBI), at 167,484 to 169,727
fhuA
b0151: fhuC - iron-hydroxamate transporter subunit (NCBI), at 169,778 to 170,575
fhuC
b0152: fhuD - iron-hydroxamate transporter subunit (NCBI), at 170,575 to 171,465
fhuD
b0153: fhuB - fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components (NCBI), at 171,462 to 173,444
fhuB
Position (kb) 169
170
171 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 168.800 kb on + strand, within fhuA at 168.899 kb on + strand, within fhuA at 168.942 kb on - strand, within fhuA at 168.944 kb on - strand, within fhuA at 168.944 kb on - strand, within fhuA at 168.961 kb on + strand, within fhuA at 169.064 kb on + strand, within fhuA at 169.127 kb on + strand, within fhuA at 169.127 kb on + strand, within fhuA at 169.135 kb on - strand, within fhuA at 169.135 kb on - strand, within fhuA at 169.167 kb on - strand, within fhuA at 169.167 kb on - strand, within fhuA at 169.202 kb on + strand, within fhuA at 169.260 kb on + strand, within fhuA at 169.330 kb on + strand, within fhuA at 169.354 kb on - strand, within fhuA at 169.354 kb on - strand, within fhuA at 169.355 kb on - strand, within fhuA at 169.361 kb on + strand, within fhuA at 169.390 kb on - strand, within fhuA at 169.437 kb on + strand, within fhuA at 169.437 kb on + strand, within fhuA at 169.467 kb on + strand, within fhuA at 169.483 kb on + strand, within fhuA at 169.490 kb on + strand, within fhuA at 169.528 kb on + strand at 169.549 kb on - strand at 169.556 kb on - strand at 169.594 kb on - strand at 169.620 kb on + strand at 169.629 kb on - strand at 169.635 kb on - strand at 169.635 kb on - strand at 169.639 kb on - strand at 169.684 kb on - strand at 169.827 kb on - strand at 169.926 kb on + strand, within fhuC at 169.926 kb on + strand, within fhuC at 169.926 kb on + strand, within fhuC at 169.929 kb on - strand, within fhuC at 169.965 kb on + strand, within fhuC at 169.966 kb on + strand, within fhuC at 169.966 kb on + strand, within fhuC at 169.989 kb on + strand, within fhuC at 170.210 kb on + strand, within fhuC at 170.210 kb on + strand, within fhuC at 170.250 kb on + strand, within fhuC at 170.250 kb on - strand, within fhuC at 170.255 kb on + strand, within fhuC at 170.257 kb on + strand, within fhuC at 170.390 kb on - strand, within fhuC at 170.390 kb on - strand, within fhuC at 170.395 kb on - strand, within fhuC at 170.654 kb on - strand at 170.671 kb on + strand, within fhuD at 170.671 kb on + strand, within fhuD at 170.689 kb on - strand, within fhuD at 170.739 kb on + strand, within fhuD at 170.739 kb on + strand, within fhuD at 170.755 kb on - strand, within fhuD at 170.755 kb on - strand, within fhuD at 170.775 kb on + strand, within fhuD at 170.831 kb on + strand, within fhuD at 170.869 kb on + strand, within fhuD at 170.869 kb on + strand, within fhuD at 170.895 kb on - strand, within fhuD at 170.895 kb on - strand, within fhuD at 170.972 kb on - strand, within fhuD at 171.065 kb on + strand, within fhuD at 171.199 kb on + strand, within fhuD at 171.199 kb on + strand, within fhuD at 171.219 kb on + strand, within fhuD at 171.225 kb on + strand, within fhuD at 171.225 kb on + strand, within fhuD at 171.228 kb on + strand, within fhuD at 171.228 kb on + strand, within fhuD at 171.238 kb on - strand, within fhuD at 171.238 kb on - strand, within fhuD at 171.307 kb on - strand, within fhuD at 171.336 kb on + strand, within fhuD at 171.336 kb on + strand, within fhuD at 171.423 kb on + strand at 171.423 kb on - strand at 171.423 kb on - strand at 171.506 kb on + strand at 171.514 kb on - strand at 171.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 168,800 + fhuA b0150 0.59 +0.4 168,899 + fhuA b0150 0.63 -0.5 168,942 - fhuA b0150 0.65 +0.6 168,944 - fhuA b0150 0.65 -0.4 168,944 - fhuA b0150 0.65 -1.2 168,961 + fhuA b0150 0.66 +1.1 169,064 + fhuA b0150 0.70 -0.2 169,127 + fhuA b0150 0.73 +0.5 169,127 + fhuA b0150 0.73 -0.8 169,135 - fhuA b0150 0.74 +0.0 169,135 - fhuA b0150 0.74 -0.5 169,167 - fhuA b0150 0.75 +0.1 169,167 - fhuA b0150 0.75 -0.6 169,202 + fhuA b0150 0.77 +0.4 169,260 + fhuA b0150 0.79 +0.2 169,330 + fhuA b0150 0.82 +0.3 169,354 - fhuA b0150 0.83 -1.0 169,354 - fhuA b0150 0.83 -0.8 169,355 - fhuA b0150 0.83 -0.4 169,361 + fhuA b0150 0.84 +0.5 169,390 - fhuA b0150 0.85 -1.2 169,437 + fhuA b0150 0.87 -0.3 169,437 + fhuA b0150 0.87 -0.5 169,467 + fhuA b0150 0.88 -0.0 169,483 + fhuA b0150 0.89 -1.8 169,490 + fhuA b0150 0.89 -0.1 169,528 + -0.7 169,549 - -0.3 169,556 - -0.5 169,594 - +0.2 169,620 + -0.0 169,629 - +0.2 169,635 - -1.2 169,635 - -1.9 169,639 - -0.6 169,684 - -0.6 169,827 - -0.5 169,926 + fhuC b0151 0.19 +0.7 169,926 + fhuC b0151 0.19 -1.6 169,926 + fhuC b0151 0.19 -1.0 169,929 - fhuC b0151 0.19 -0.5 169,965 + fhuC b0151 0.23 -0.7 169,966 + fhuC b0151 0.24 -0.7 169,966 + fhuC b0151 0.24 -0.8 169,989 + fhuC b0151 0.26 -0.5 170,210 + fhuC b0151 0.54 -0.3 170,210 + fhuC b0151 0.54 -0.7 170,250 + fhuC b0151 0.59 -0.2 170,250 - fhuC b0151 0.59 -1.6 170,255 + fhuC b0151 0.60 -0.5 170,257 + fhuC b0151 0.60 -0.7 170,390 - fhuC b0151 0.77 -1.2 170,390 - fhuC b0151 0.77 -1.4 170,395 - fhuC b0151 0.77 -0.6 170,654 - -0.6 170,671 + fhuD b0152 0.11 -0.2 170,671 + fhuD b0152 0.11 -0.6 170,689 - fhuD b0152 0.13 +0.1 170,739 + fhuD b0152 0.18 -0.9 170,739 + fhuD b0152 0.18 +0.4 170,755 - fhuD b0152 0.20 +0.5 170,755 - fhuD b0152 0.20 +1.4 170,775 + fhuD b0152 0.22 -0.9 170,831 + fhuD b0152 0.29 +1.0 170,869 + fhuD b0152 0.33 -0.1 170,869 + fhuD b0152 0.33 -0.3 170,895 - fhuD b0152 0.36 -0.3 170,895 - fhuD b0152 0.36 -0.4 170,972 - fhuD b0152 0.45 -1.8 171,065 + fhuD b0152 0.55 -0.5 171,199 + fhuD b0152 0.70 -0.5 171,199 + fhuD b0152 0.70 +0.3 171,219 + fhuD b0152 0.72 -0.6 171,225 + fhuD b0152 0.73 -1.1 171,225 + fhuD b0152 0.73 -0.1 171,228 + fhuD b0152 0.73 -0.6 171,228 + fhuD b0152 0.73 +0.0 171,238 - fhuD b0152 0.74 -0.2 171,238 - fhuD b0152 0.74 -0.5 171,307 - fhuD b0152 0.82 -1.2 171,336 + fhuD b0152 0.85 -1.5 171,336 + fhuD b0152 0.85 -1.1 171,423 + -0.6 171,423 - -4.9 171,423 - -0.8 171,506 + +0.2 171,514 - -0.4 171,533 - -0.7
Or see this region's nucleotide sequence