Strain Fitness in Pseudomonas putida KT2440 around PP_4583

Experiment: nitrogen source nitrite 0.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4581 and PP_4582 are separated by 14 nucleotidesPP_4582 and PP_4583 are separated by 179 nucleotidesPP_4583 and PP_4584 are separated by 459 nucleotidesPP_4584 and PP_4585 are separated by 71 nucleotides PP_4581: PP_4581 - putative amidotransferase, at 5,200,229 to 5,201,002 _4581 PP_4582: PP_4582 - conserved membrane protein of unknown function, at 5,201,017 to 5,201,514 _4582 PP_4583: PP_4583 - putative Peptidase, at 5,201,694 to 5,203,736 _4583 PP_4584: PP_4584 - putative endonuclease, at 5,204,196 to 5,204,567 _4584 PP_4585: PP_4585 - RNA methyltransferase, TrmH family, at 5,204,639 to 5,205,109 _4585 Position (kb) 5201 5202 5203 5204Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5200.771 kb on + strand, within PP_4581at 5200.772 kb on - strand, within PP_4581at 5200.890 kb on - strand, within PP_4581at 5201.002 kb on + strandat 5201.002 kb on + strandat 5201.003 kb on - strandat 5201.003 kb on - strandat 5201.003 kb on - strandat 5201.225 kb on + strand, within PP_4582at 5201.226 kb on - strand, within PP_4582at 5201.226 kb on - strand, within PP_4582at 5201.249 kb on + strand, within PP_4582at 5201.249 kb on + strand, within PP_4582at 5201.250 kb on - strand, within PP_4582at 5201.250 kb on - strand, within PP_4582at 5201.462 kb on - strand, within PP_4582at 5201.477 kb on + strandat 5201.498 kb on + strandat 5201.546 kb on + strandat 5201.546 kb on + strandat 5201.547 kb on - strandat 5201.547 kb on - strandat 5201.547 kb on - strandat 5201.547 kb on - strandat 5201.547 kb on - strandat 5201.617 kb on - strandat 5201.748 kb on + strandat 5201.749 kb on - strandat 5201.782 kb on + strandat 5201.783 kb on - strandat 5201.791 kb on - strandat 5201.812 kb on - strandat 5201.922 kb on + strand, within PP_4583at 5201.928 kb on + strand, within PP_4583at 5201.928 kb on + strand, within PP_4583at 5201.928 kb on + strand, within PP_4583at 5201.929 kb on - strand, within PP_4583at 5201.929 kb on - strand, within PP_4583at 5201.929 kb on - strand, within PP_4583at 5201.931 kb on + strand, within PP_4583at 5201.931 kb on + strand, within PP_4583at 5201.931 kb on + strand, within PP_4583at 5201.931 kb on + strand, within PP_4583at 5201.932 kb on - strand, within PP_4583at 5202.115 kb on - strand, within PP_4583at 5202.115 kb on - strand, within PP_4583at 5202.116 kb on + strand, within PP_4583at 5202.116 kb on + strand, within PP_4583at 5202.116 kb on + strand, within PP_4583at 5202.117 kb on - strand, within PP_4583at 5202.117 kb on - strand, within PP_4583at 5202.144 kb on + strand, within PP_4583at 5202.145 kb on - strand, within PP_4583at 5202.153 kb on + strand, within PP_4583at 5202.154 kb on - strand, within PP_4583at 5202.154 kb on - strand, within PP_4583at 5202.154 kb on - strand, within PP_4583at 5202.185 kb on + strand, within PP_4583at 5202.496 kb on - strand, within PP_4583at 5202.496 kb on - strand, within PP_4583at 5202.576 kb on + strand, within PP_4583at 5202.577 kb on - strand, within PP_4583at 5202.774 kb on + strand, within PP_4583at 5202.774 kb on + strand, within PP_4583at 5202.775 kb on - strand, within PP_4583at 5202.783 kb on + strand, within PP_4583at 5202.784 kb on - strand, within PP_4583at 5202.784 kb on - strand, within PP_4583at 5202.784 kb on - strand, within PP_4583at 5202.820 kb on + strand, within PP_4583at 5202.821 kb on - strand, within PP_4583at 5202.821 kb on - strand, within PP_4583at 5202.821 kb on - strand, within PP_4583at 5202.939 kb on + strand, within PP_4583at 5202.939 kb on + strand, within PP_4583at 5202.939 kb on + strand, within PP_4583at 5202.939 kb on + strand, within PP_4583at 5202.940 kb on - strand, within PP_4583at 5203.038 kb on + strand, within PP_4583at 5203.039 kb on - strand, within PP_4583at 5203.039 kb on - strand, within PP_4583at 5203.044 kb on + strand, within PP_4583at 5203.044 kb on + strand, within PP_4583at 5203.045 kb on - strand, within PP_4583at 5203.050 kb on + strand, within PP_4583at 5203.050 kb on + strand, within PP_4583at 5203.051 kb on - strand, within PP_4583at 5203.059 kb on + strand, within PP_4583at 5203.059 kb on + strand, within PP_4583at 5203.059 kb on + strand, within PP_4583at 5203.060 kb on - strand, within PP_4583at 5203.060 kb on - strand, within PP_4583at 5203.060 kb on - strand, within PP_4583at 5203.173 kb on + strand, within PP_4583at 5203.173 kb on + strand, within PP_4583at 5203.174 kb on - strand, within PP_4583at 5203.194 kb on + strand, within PP_4583at 5203.195 kb on - strand, within PP_4583at 5203.425 kb on + strand, within PP_4583at 5203.461 kb on + strand, within PP_4583at 5203.461 kb on + strand, within PP_4583at 5203.461 kb on + strand, within PP_4583at 5203.461 kb on + strand, within PP_4583at 5203.461 kb on + strand, within PP_4583at 5203.479 kb on + strand, within PP_4583at 5203.479 kb on + strand, within PP_4583at 5203.480 kb on - strand, within PP_4583at 5203.560 kb on + strandat 5203.702 kb on - strandat 5203.728 kb on - strandat 5203.739 kb on + strandat 5203.739 kb on + strandat 5203.904 kb on - strandat 5203.904 kb on - strandat 5203.904 kb on - strandat 5203.919 kb on + strandat 5203.919 kb on + strandat 5203.920 kb on - strandat 5203.929 kb on + strandat 5203.939 kb on + strandat 5203.952 kb on + strandat 5203.952 kb on + strandat 5203.982 kb on + strandat 5203.983 kb on - strandat 5204.097 kb on + strandat 5204.098 kb on - strandat 5204.159 kb on + strandat 5204.159 kb on + strandat 5204.302 kb on - strand, within PP_4584at 5204.302 kb on - strand, within PP_4584at 5204.433 kb on + strand, within PP_4584at 5204.433 kb on + strand, within PP_4584at 5204.460 kb on + strand, within PP_4584at 5204.475 kb on + strand, within PP_4584at 5204.519 kb on + strand, within PP_4584at 5204.519 kb on + strand, within PP_4584at 5204.604 kb on + strandat 5204.604 kb on + strandat 5204.605 kb on - strandat 5204.606 kb on + strandat 5204.654 kb on + strandat 5204.726 kb on + strand, within PP_4585at 5204.726 kb on + strand, within PP_4585at 5204.726 kb on + strand, within PP_4585at 5204.727 kb on - strand, within PP_4585

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM
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5,200,771 + PP_4581 0.70 -0.4
5,200,772 - PP_4581 0.70 -1.4
5,200,890 - PP_4581 0.85 +0.6
5,201,002 + -0.6
5,201,002 + +0.2
5,201,003 - +0.1
5,201,003 - -1.1
5,201,003 - -1.8
5,201,225 + PP_4582 0.42 -0.1
5,201,226 - PP_4582 0.42 +0.4
5,201,226 - PP_4582 0.42 -0.2
5,201,249 + PP_4582 0.47 +1.1
5,201,249 + PP_4582 0.47 -3.8
5,201,250 - PP_4582 0.47 +0.5
5,201,250 - PP_4582 0.47 -0.6
5,201,462 - PP_4582 0.89 -0.1
5,201,477 + +1.3
5,201,498 + +0.8
5,201,546 + +1.6
5,201,546 + +0.3
5,201,547 - -0.1
5,201,547 - +0.9
5,201,547 - -1.2
5,201,547 - +0.4
5,201,547 - -1.4
5,201,617 - -0.8
5,201,748 + +0.5
5,201,749 - -3.3
5,201,782 + +0.2
5,201,783 - +0.1
5,201,791 - +0.2
5,201,812 - -0.1
5,201,922 + PP_4583 0.11 -0.5
5,201,928 + PP_4583 0.11 -2.0
5,201,928 + PP_4583 0.11 -1.7
5,201,928 + PP_4583 0.11 +0.6
5,201,929 - PP_4583 0.12 -0.1
5,201,929 - PP_4583 0.12 -0.1
5,201,929 - PP_4583 0.12 +0.2
5,201,931 + PP_4583 0.12 -0.6
5,201,931 + PP_4583 0.12 +0.7
5,201,931 + PP_4583 0.12 -3.9
5,201,931 + PP_4583 0.12 -0.8
5,201,932 - PP_4583 0.12 -2.0
5,202,115 - PP_4583 0.21 +0.3
5,202,115 - PP_4583 0.21 -2.7
5,202,116 + PP_4583 0.21 -4.2
5,202,116 + PP_4583 0.21 -0.6
5,202,116 + PP_4583 0.21 -2.5
5,202,117 - PP_4583 0.21 -3.2
5,202,117 - PP_4583 0.21 +0.3
5,202,144 + PP_4583 0.22 -3.5
5,202,145 - PP_4583 0.22 +0.1
5,202,153 + PP_4583 0.22 -0.1
5,202,154 - PP_4583 0.23 -0.5
5,202,154 - PP_4583 0.23 +0.2
5,202,154 - PP_4583 0.23 -0.8
5,202,185 + PP_4583 0.24 +0.3
5,202,496 - PP_4583 0.39 -4.8
5,202,496 - PP_4583 0.39 -0.1
5,202,576 + PP_4583 0.43 -1.0
5,202,577 - PP_4583 0.43 -1.8
5,202,774 + PP_4583 0.53 +0.0
5,202,774 + PP_4583 0.53 -0.9
5,202,775 - PP_4583 0.53 -1.8
5,202,783 + PP_4583 0.53 -0.1
5,202,784 - PP_4583 0.53 -1.4
5,202,784 - PP_4583 0.53 -3.9
5,202,784 - PP_4583 0.53 -2.6
5,202,820 + PP_4583 0.55 +0.6
5,202,821 - PP_4583 0.55 +0.4
5,202,821 - PP_4583 0.55 -0.1
5,202,821 - PP_4583 0.55 -4.6
5,202,939 + PP_4583 0.61 -2.3
5,202,939 + PP_4583 0.61 -0.6
5,202,939 + PP_4583 0.61 +1.0
5,202,939 + PP_4583 0.61 -4.8
5,202,940 - PP_4583 0.61 -1.2
5,203,038 + PP_4583 0.66 -2.6
5,203,039 - PP_4583 0.66 -0.6
5,203,039 - PP_4583 0.66 -3.3
5,203,044 + PP_4583 0.66 -0.1
5,203,044 + PP_4583 0.66 -1.4
5,203,045 - PP_4583 0.66 -0.1
5,203,050 + PP_4583 0.66 -0.1
5,203,050 + PP_4583 0.66 +1.1
5,203,051 - PP_4583 0.66 -1.0
5,203,059 + PP_4583 0.67 -1.8
5,203,059 + PP_4583 0.67 -1.8
5,203,059 + PP_4583 0.67 -0.0
5,203,060 - PP_4583 0.67 +1.2
5,203,060 - PP_4583 0.67 -3.0
5,203,060 - PP_4583 0.67 -0.1
5,203,173 + PP_4583 0.72 +0.3
5,203,173 + PP_4583 0.72 -5.1
5,203,174 - PP_4583 0.72 -1.9
5,203,194 + PP_4583 0.73 +0.1
5,203,195 - PP_4583 0.73 +1.2
5,203,425 + PP_4583 0.85 +0.5
5,203,461 + PP_4583 0.86 -2.0
5,203,461 + PP_4583 0.86 +1.0
5,203,461 + PP_4583 0.86 -2.2
5,203,461 + PP_4583 0.86 -1.2
5,203,461 + PP_4583 0.86 -0.8
5,203,479 + PP_4583 0.87 -2.9
5,203,479 + PP_4583 0.87 -1.6
5,203,480 - PP_4583 0.87 -4.3
5,203,560 + -0.6
5,203,702 - +0.1
5,203,728 - -3.3
5,203,739 + -3.1
5,203,739 + -3.2
5,203,904 - +0.2
5,203,904 - -2.2
5,203,904 - -2.5
5,203,919 + +0.4
5,203,919 + -0.0
5,203,920 - -0.5
5,203,929 + +0.3
5,203,939 + -0.3
5,203,952 + +0.6
5,203,952 + -0.6
5,203,982 + -0.6
5,203,983 - +1.6
5,204,097 + -1.3
5,204,098 - +1.1
5,204,159 + +1.3
5,204,159 + -1.3
5,204,302 - PP_4584 0.28 -1.1
5,204,302 - PP_4584 0.28 +1.7
5,204,433 + PP_4584 0.64 +0.2
5,204,433 + PP_4584 0.64 +1.2
5,204,460 + PP_4584 0.71 +1.2
5,204,475 + PP_4584 0.75 -2.0
5,204,519 + PP_4584 0.87 +1.3
5,204,519 + PP_4584 0.87 -1.3
5,204,604 + +0.7
5,204,604 + -1.0
5,204,605 - -1.7
5,204,606 + -0.3
5,204,654 + -1.4
5,204,726 + PP_4585 0.18 +0.5
5,204,726 + PP_4585 0.18 +0.7
5,204,726 + PP_4585 0.18 -0.5
5,204,727 - PP_4585 0.19 -0.0

Or see this region's nucleotide sequence