Strain Fitness in Escherichia coli BW25113 around b3525

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
3,675,477	-	yhjG	b3524	0.56	+0.6
3,675,557	+	yhjG	b3524	0.60	-0.8
3,675,587	+	yhjG	b3524	0.62	-1.2
3,675,587	+	yhjG	b3524	0.62	+0.2
3,675,679	+	yhjG	b3524	0.66	+0.1
3,675,679	+	yhjG	b3524	0.66	-0.0
3,675,697	-	yhjG	b3524	0.67	-0.1
3,675,697	-	yhjG	b3524	0.67	-0.5
3,675,702	-	yhjG	b3524	0.67	+0.4
3,675,770	-	yhjG	b3524	0.71	-0.2
3,675,798	+	yhjG	b3524	0.72	+0.1
3,675,848	+	yhjG	b3524	0.74	+0.3
3,675,942	-	yhjG	b3524	0.79	-0.1
3,675,942	-	yhjG	b3524	0.79	-0.5
3,676,012	+	yhjG	b3524	0.82	+1.1
3,676,012	+	yhjG	b3524	0.82	-0.3
3,676,087	+	yhjG	b3524	0.86	+0.3
3,676,104	+	yhjG	b3524	0.87	-0.2
3,676,104	+	yhjG	b3524	0.87	+0.3
3,676,133	-	yhjG	b3524	0.88	+0.6
3,676,146	+	yhjG	b3524	0.89	+1.0
3,676,191	+				+0.6
3,676,209	-				-0.7
3,676,210	-				-0.5
3,676,241	-				-0.3
3,676,257	-				-0.0
3,676,382	+				-1.1
3,676,390	-				+0.8
3,676,390	-				-1.7
3,676,404	+				+0.3
3,676,404	+				-0.6
3,676,404	+				+0.4
3,676,412	-				+0.4
3,676,412	-				-0.0
3,676,414	-				-0.0
3,676,419	-				+0.5
3,676,441	+				-0.6
3,676,441	+				+0.4
3,676,457	-				-0.2
3,676,457	-				-0.6
3,676,457	-				+0.8
3,676,467	+				-0.5
3,676,530	-	yhjH	b3525	0.11	+0.0
3,676,630	-	yhjH	b3525	0.24	+0.2
3,676,683	+	yhjH	b3525	0.31	-0.7
3,676,740	+	yhjH	b3525	0.39	-2.8
3,676,797	+	yhjH	b3525	0.46	-0.7
3,676,797	+	yhjH	b3525	0.46	+0.0
3,676,880	+	yhjH	b3525	0.57	-0.8
3,676,901	-	yhjH	b3525	0.60	+0.0
3,676,901	-	yhjH	b3525	0.60	-0.3
3,676,993	-	yhjH	b3525	0.72	+0.0
3,676,993	-	yhjH	b3525	0.72	-1.4
3,677,042	+	yhjH	b3525	0.78	-1.0
3,677,057	+	yhjH	b3525	0.80	+0.4
3,677,057	+				+1.9
3,677,113	+	yhjH	b3525	0.87	-1.1
3,677,121	-	yhjH	b3525	0.88	-2.7
3,677,130	-	yhjH	b3525	0.89	-0.5
3,677,130	-	yhjH	b3525	0.89	-0.7
3,677,130	-	yhjH	b3525	0.89	-1.5
3,677,130	-	yhjH	b3525	0.89	-0.2
3,677,130	-	yhjH	b3525	0.89	+0.3
3,677,171	+				-0.1
3,677,196	+				+0.4
3,677,201	+				+0.3
3,677,256	+				+2.1
3,677,515	+				-0.0
3,677,532	-				+2.5
3,677,532	-				+1.6
3,677,537	-	kdgK	b3526	0.10	-0.5
3,677,537	-	kdgK	b3526	0.10	+0.1
3,677,539	+	kdgK	b3526	0.10	+0.5
3,677,546	-	kdgK	b3526	0.11	+0.6
3,677,581	-	kdgK	b3526	0.15	+0.2
3,677,581	-	kdgK	b3526	0.15	-1.3
3,677,588	+	kdgK	b3526	0.16	-2.7
3,677,606	-	kdgK	b3526	0.18	-0.0
3,677,614	+	kdgK	b3526	0.18	-0.6
3,677,622	-	kdgK	b3526	0.19	+0.1
3,677,662	+	kdgK	b3526	0.24	-0.7
3,677,698	+	kdgK	b3526	0.28	-0.1
3,677,698	+	kdgK	b3526	0.28	-0.3
3,677,753	+	kdgK	b3526	0.33	-0.0
3,677,753	+	kdgK	b3526	0.33	-1.5
3,677,790	-	kdgK	b3526	0.37	-0.5
3,677,792	+	kdgK	b3526	0.38	+0.9
3,677,794	-	kdgK	b3526	0.38	+0.0
3,677,836	+	kdgK	b3526	0.42	+2.0
3,677,838	-	kdgK	b3526	0.43	-0.1
3,677,838	-	kdgK	b3526	0.43	-0.1
3,677,838	-	kdgK	b3526	0.43	+1.1
3,677,845	+	kdgK	b3526	0.43	-0.2
3,677,845	+	kdgK	b3526	0.43	+0.5
3,677,853	-	kdgK	b3526	0.44	-2.6
3,677,860	+	kdgK	b3526	0.45	-0.1
3,677,860	+	kdgK	b3526	0.45	+0.1
3,677,868	-	kdgK	b3526	0.46	+0.6
3,677,868	-	kdgK	b3526	0.46	-0.3
3,677,897	+	kdgK	b3526	0.49	+1.3
3,677,952	-	kdgK	b3526	0.55	+0.7
3,677,957	+	kdgK	b3526	0.55	-2.2
3,677,965	-	kdgK	b3526	0.56	+0.6
3,677,965	-	kdgK	b3526	0.56	-0.1
3,677,965	-	kdgK	b3526	0.56	+0.3
3,677,982	+	kdgK	b3526	0.58	-0.4
3,677,985	-	kdgK	b3526	0.58	+0.6
3,678,005	-	kdgK	b3526	0.61	+0.5
3,678,051	+	kdgK	b3526	0.65	-0.0
3,678,051	+	kdgK	b3526	0.65	+0.4
3,678,057	+	kdgK	b3526	0.66	-0.2
3,678,074	-	kdgK	b3526	0.68	+0.3
3,678,091	+	kdgK	b3526	0.70	-0.4
3,678,091	+	kdgK	b3526	0.70	-1.8
3,678,099	-	kdgK	b3526	0.71	+0.9
3,678,139	+	kdgK	b3526	0.75	-0.0
3,678,149	+	kdgK	b3526	0.76	-0.8
3,678,165	+	kdgK	b3526	0.78	-0.5
3,678,165	+	kdgK	b3526	0.78	-0.3
3,678,173	-	kdgK	b3526	0.79	-0.6
3,678,173	-	kdgK	b3526	0.79	+0.6
3,678,175	-	kdgK	b3526	0.79	-0.3
3,678,175	-	kdgK	b3526	0.79	+0.5