Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjgZ and insG are separated by 513 nucleotides insG and yjhB are separated by 626 nucleotides
b4277: yjgZ - KpLE2 phage-like element; predicted protein (NCBI), at 4,499,283 to 4,499,612
yjgZ
b4278: insG - KpLE2 phage-like element; IS4 predicted transposase (NCBI), at 4,500,126 to 4,501,454
insG
b4279: yjhB - putative transport protein (VIMSS), at 4,502,081 to 4,503,298
yjhB
Position (kb)
4500
4501
4502 Strain fitness (log2 ratio)
-1
0
1 at 4499.230 kb on + strand at 4499.238 kb on - strand at 4499.279 kb on - strand at 4499.290 kb on + strand at 4499.290 kb on + strand at 4499.309 kb on - strand at 4499.385 kb on - strand, within yjgZ at 4499.387 kb on + strand, within yjgZ at 4499.408 kb on - strand, within yjgZ at 4499.451 kb on + strand, within yjgZ at 4499.466 kb on - strand, within yjgZ at 4499.486 kb on - strand, within yjgZ at 4499.503 kb on + strand, within yjgZ at 4499.552 kb on - strand, within yjgZ at 4499.584 kb on - strand at 4499.612 kb on + strand at 4499.612 kb on + strand at 4499.641 kb on - strand at 4499.721 kb on - strand at 4499.735 kb on - strand at 4499.735 kb on - strand at 4499.752 kb on - strand at 4499.752 kb on - strand at 4499.770 kb on + strand at 4499.770 kb on + strand at 4499.783 kb on + strand at 4499.793 kb on + strand at 4499.799 kb on + strand at 4499.834 kb on + strand at 4499.834 kb on + strand at 4499.845 kb on + strand at 4499.845 kb on + strand at 4499.901 kb on + strand at 4499.901 kb on + strand at 4499.906 kb on + strand at 4499.948 kb on - strand at 4499.948 kb on - strand at 4499.954 kb on + strand at 4499.980 kb on - strand at 4499.999 kb on + strand at 4499.999 kb on + strand at 4500.007 kb on - strand at 4500.055 kb on - strand at 4500.084 kb on + strand at 4500.174 kb on - strand at 4500.185 kb on - strand at 4500.196 kb on - strand at 4500.196 kb on - strand at 4500.309 kb on + strand, within insG at 4500.464 kb on + strand, within insG at 4500.477 kb on - strand, within insG at 4500.480 kb on - strand, within insG at 4500.524 kb on + strand, within insG at 4500.529 kb on + strand, within insG at 4500.532 kb on + strand, within insG at 4500.534 kb on + strand, within insG at 4500.540 kb on - strand, within insG at 4500.637 kb on + strand, within insG at 4500.637 kb on + strand, within insG at 4500.796 kb on - strand, within insG at 4500.804 kb on - strand, within insG at 4500.814 kb on - strand, within insG at 4500.814 kb on - strand, within insG at 4500.937 kb on - strand, within insG at 4500.995 kb on + strand, within insG at 4500.995 kb on + strand, within insG at 4501.021 kb on - strand, within insG at 4501.021 kb on - strand, within insG at 4501.052 kb on - strand, within insG at 4501.062 kb on + strand, within insG at 4501.108 kb on + strand, within insG at 4501.263 kb on - strand, within insG at 4501.263 kb on - strand, within insG at 4501.275 kb on + strand, within insG at 4501.287 kb on - strand, within insG at 4501.432 kb on + strand at 4501.432 kb on + strand at 4501.498 kb on + strand at 4501.759 kb on + strand at 4501.759 kb on + strand at 4501.768 kb on + strand at 4501.768 kb on + strand at 4501.778 kb on + strand at 4501.778 kb on + strand at 4501.778 kb on + strand at 4501.799 kb on + strand at 4501.799 kb on + strand at 4501.821 kb on + strand at 4501.821 kb on + strand at 4501.821 kb on + strand at 4501.821 kb on + strand at 4501.821 kb on + strand at 4501.823 kb on + strand at 4501.826 kb on + strand at 4501.837 kb on + strand at 4501.875 kb on + strand at 4501.875 kb on + strand at 4501.887 kb on + strand at 4501.906 kb on + strand at 4501.914 kb on + strand at 4501.918 kb on + strand at 4501.918 kb on + strand at 4501.956 kb on + strand at 4501.956 kb on + strand at 4501.957 kb on + strand at 4501.957 kb on + strand at 4501.971 kb on + strand at 4501.974 kb on + strand at 4501.981 kb on + strand at 4502.265 kb on - strand, within yjhB at 4502.276 kb on - strand, within yjhB at 4502.363 kb on + strand, within yjhB
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 4,499,230 + +0.2 4,499,238 - -0.4 4,499,279 - -0.6 4,499,290 + -0.4 4,499,290 + +0.3 4,499,309 - +0.5 4,499,385 - yjgZ b4277 0.31 +0.4 4,499,387 + yjgZ b4277 0.32 +0.0 4,499,408 - yjgZ b4277 0.38 -0.2 4,499,451 + yjgZ b4277 0.51 +0.1 4,499,466 - yjgZ b4277 0.55 +0.8 4,499,486 - yjgZ b4277 0.62 -0.2 4,499,503 + yjgZ b4277 0.67 +0.3 4,499,552 - yjgZ b4277 0.82 +0.2 4,499,584 - +0.3 4,499,612 + -0.5 4,499,612 + +0.2 4,499,641 - +0.5 4,499,721 - -0.3 4,499,735 - +0.5 4,499,735 - +0.4 4,499,752 - +1.2 4,499,752 - +0.4 4,499,770 + +0.2 4,499,770 + -0.3 4,499,783 + +0.1 4,499,793 + +0.6 4,499,799 + -0.8 4,499,834 + +0.3 4,499,834 + +0.2 4,499,845 + -0.4 4,499,845 + -0.3 4,499,901 + +0.1 4,499,901 + +0.2 4,499,906 + +0.3 4,499,948 - -0.1 4,499,948 - +0.3 4,499,954 + +0.5 4,499,980 - -0.2 4,499,999 + -0.3 4,499,999 + -0.4 4,500,007 - +0.6 4,500,055 - +0.3 4,500,084 + -0.4 4,500,174 - -0.2 4,500,185 - -0.7 4,500,196 - -0.3 4,500,196 - -0.4 4,500,309 + insG b4278 0.14 +0.1 4,500,464 + insG b4278 0.25 +0.1 4,500,477 - insG b4278 0.26 +0.3 4,500,480 - insG b4278 0.27 -0.1 4,500,524 + insG b4278 0.30 +0.1 4,500,529 + insG b4278 0.30 -0.4 4,500,532 + insG b4278 0.31 -1.4 4,500,534 + insG b4278 0.31 +0.4 4,500,540 - insG b4278 0.31 -0.5 4,500,637 + insG b4278 0.38 +0.7 4,500,637 + insG b4278 0.38 +0.1 4,500,796 - insG b4278 0.50 -0.5 4,500,804 - insG b4278 0.51 +0.4 4,500,814 - insG b4278 0.52 -0.4 4,500,814 - insG b4278 0.52 -0.2 4,500,937 - insG b4278 0.61 -0.5 4,500,995 + insG b4278 0.65 +0.4 4,500,995 + insG b4278 0.65 -0.0 4,501,021 - insG b4278 0.67 -0.3 4,501,021 - insG b4278 0.67 -0.5 4,501,052 - insG b4278 0.70 -0.2 4,501,062 + insG b4278 0.70 +0.1 4,501,108 + insG b4278 0.74 -0.2 4,501,263 - insG b4278 0.86 -0.3 4,501,263 - insG b4278 0.86 -0.2 4,501,275 + insG b4278 0.86 +0.4 4,501,287 - insG b4278 0.87 -0.3 4,501,432 + -0.6 4,501,432 + +0.4 4,501,498 + +0.1 4,501,759 + -0.3 4,501,759 + -0.1 4,501,768 + +0.6 4,501,768 + +0.8 4,501,778 + -0.6 4,501,778 + +0.7 4,501,778 + -0.0 4,501,799 + -0.1 4,501,799 + -0.0 4,501,821 + -1.2 4,501,821 + -0.1 4,501,821 + -0.1 4,501,821 + -0.6 4,501,821 + +0.1 4,501,823 + +0.1 4,501,826 + -0.0 4,501,837 + -0.3 4,501,875 + +0.6 4,501,875 + +1.0 4,501,887 + -0.1 4,501,906 + +0.8 4,501,914 + -0.1 4,501,918 + -0.7 4,501,918 + +0.1 4,501,956 + -0.5 4,501,956 + -1.2 4,501,957 + +0.3 4,501,957 + -0.0 4,501,971 + -0.2 4,501,974 + +0.2 4,501,981 + -0.9 4,502,265 - yjhB b4279 0.15 +0.8 4,502,276 - yjhB b4279 0.16 -0.8 4,502,363 + yjhB b4279 0.23 +0.8
Or see this region's nucleotide sequence