Experiment: nitrogen source Ammonium chloride 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4731 and PP_4732 are separated by 64 nucleotides PP_4732 and PP_4733 are separated by 49 nucleotides PP_4733 and PP_4734 are separated by 132 nucleotides
PP_4731: PP_4731 - Outer membrane protein assembly factor BamE, at 5,380,699 to 5,381,235
_4731
PP_4732: PP_4732 - conserved protein of unknown function, at 5,381,300 to 5,381,848
_4732
PP_4733: PP_4733 - SsrA-binding protein, at 5,381,898 to 5,382,380
_4733
PP_4734: PP_4734 - DNA-binding transcriptional dual regulator, LldR-L-lactate, at 5,382,513 to 5,383,280
_4734
Position (kb) 5381
5382
5383 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5381.294 kb on + strand at 5381.294 kb on + strand at 5381.295 kb on - strand at 5381.295 kb on - strand at 5381.296 kb on + strand at 5381.296 kb on + strand at 5381.297 kb on - strand at 5381.297 kb on - strand at 5381.297 kb on - strand at 5381.297 kb on - strand at 5381.297 kb on - strand at 5381.814 kb on - strand at 5381.883 kb on + strand at 5381.883 kb on + strand at 5381.883 kb on + strand at 5381.897 kb on + strand at 5382.378 kb on + strand at 5382.378 kb on + strand at 5382.379 kb on - strand at 5382.382 kb on + strand at 5382.382 kb on + strand at 5382.382 kb on + strand at 5382.383 kb on - strand at 5382.383 kb on - strand at 5382.460 kb on - strand at 5382.496 kb on + strand at 5382.505 kb on + strand at 5382.506 kb on - strand at 5382.589 kb on + strand at 5382.590 kb on - strand, within PP_4734 at 5382.590 kb on - strand, within PP_4734 at 5382.652 kb on + strand, within PP_4734 at 5382.652 kb on + strand, within PP_4734 at 5382.652 kb on + strand, within PP_4734 at 5382.706 kb on + strand, within PP_4734 at 5382.706 kb on + strand, within PP_4734 at 5382.706 kb on + strand, within PP_4734 at 5382.706 kb on + strand, within PP_4734 at 5382.706 kb on + strand, within PP_4734 at 5382.706 kb on + strand, within PP_4734 at 5382.707 kb on - strand, within PP_4734 at 5382.868 kb on + strand, within PP_4734 at 5382.868 kb on + strand, within PP_4734 at 5382.869 kb on - strand, within PP_4734 at 5382.869 kb on - strand, within PP_4734 at 5382.869 kb on - strand, within PP_4734 at 5382.940 kb on + strand, within PP_4734 at 5382.941 kb on - strand, within PP_4734 at 5382.941 kb on - strand, within PP_4734 at 5382.941 kb on - strand, within PP_4734 at 5382.941 kb on - strand, within PP_4734 at 5382.941 kb on - strand, within PP_4734 at 5382.944 kb on - strand, within PP_4734 at 5383.264 kb on - strand at 5383.264 kb on - strand at 5383.264 kb on - strand at 5383.324 kb on - strand at 5383.324 kb on - strand at 5383.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source Ammonium chloride 20mM remove 5,381,294 + +0.4 5,381,294 + -0.1 5,381,295 - +0.4 5,381,295 - -0.3 5,381,296 + -0.7 5,381,296 + -1.1 5,381,297 - +0.3 5,381,297 - +0.1 5,381,297 - +1.2 5,381,297 - +1.5 5,381,297 - -0.2 5,381,814 - +1.3 5,381,883 + -1.3 5,381,883 + -0.2 5,381,883 + +1.5 5,381,897 + -1.2 5,382,378 + -1.2 5,382,378 + +1.9 5,382,379 - +1.4 5,382,382 + +1.1 5,382,382 + +0.3 5,382,382 + -0.6 5,382,383 - +0.8 5,382,383 - +0.3 5,382,460 - +0.9 5,382,496 + +0.7 5,382,505 + +0.2 5,382,506 - +1.9 5,382,589 + -2.5 5,382,590 - PP_4734 0.10 -0.1 5,382,590 - PP_4734 0.10 -0.3 5,382,652 + PP_4734 0.18 -0.4 5,382,652 + PP_4734 0.18 -0.2 5,382,652 + PP_4734 0.18 -0.3 5,382,706 + PP_4734 0.25 +0.9 5,382,706 + PP_4734 0.25 -1.0 5,382,706 + PP_4734 0.25 -0.5 5,382,706 + PP_4734 0.25 +0.3 5,382,706 + PP_4734 0.25 +1.5 5,382,706 + PP_4734 0.25 -0.9 5,382,707 - PP_4734 0.25 -1.9 5,382,868 + PP_4734 0.46 -2.9 5,382,868 + PP_4734 0.46 +0.8 5,382,869 - PP_4734 0.46 -0.9 5,382,869 - PP_4734 0.46 +0.3 5,382,869 - PP_4734 0.46 +0.3 5,382,940 + PP_4734 0.56 +0.0 5,382,941 - PP_4734 0.56 +0.8 5,382,941 - PP_4734 0.56 -1.0 5,382,941 - PP_4734 0.56 +0.8 5,382,941 - PP_4734 0.56 +0.3 5,382,941 - PP_4734 0.56 +0.5 5,382,944 - PP_4734 0.56 -1.4 5,383,264 - -1.2 5,383,264 - -0.9 5,383,264 - +0.1 5,383,324 - +1.1 5,383,324 - +0.8 5,383,324 - +2.3
Or see this region's nucleotide sequence