Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4956 and PP_4957 are separated by 23 nucleotides PP_4957 and PP_4958 are separated by 12 nucleotides PP_4958 and PP_4959 are separated by 0 nucleotides PP_4959 and PP_4960 are separated by 212 nucleotides
PP_4956: PP_4956 - putative acyltransferase, at 5,647,741 to 5,648,193
_4956
PP_4957: PP_4957 - conserved protein of unknown function, at 5,648,217 to 5,648,513
_4957
PP_4958: PP_4958 - putative metal-dependent hydrolase, at 5,648,526 to 5,649,065
_4958
PP_4959: PP_4959 - diguanylate cyclase, at 5,649,066 to 5,651,192
_4959
PP_4960: PP_4960 - Fructose-bisphosphate aldolase, at 5,651,405 to 5,652,469
_4960
Position (kb) 5649
5650
5651
5652 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5648.080 kb on + strand, within PP_4956 at 5648.080 kb on + strand, within PP_4956 at 5648.081 kb on - strand, within PP_4956 at 5648.103 kb on - strand, within PP_4956 at 5648.103 kb on - strand, within PP_4956 at 5648.113 kb on + strand, within PP_4956 at 5648.114 kb on - strand, within PP_4956 at 5648.378 kb on + strand, within PP_4957 at 5648.379 kb on - strand, within PP_4957 at 5648.470 kb on + strand, within PP_4957 at 5648.471 kb on - strand, within PP_4957 at 5648.527 kb on + strand at 5648.528 kb on - strand at 5648.551 kb on + strand at 5648.551 kb on + strand at 5648.552 kb on - strand at 5648.560 kb on + strand at 5648.591 kb on - strand, within PP_4958 at 5648.591 kb on - strand, within PP_4958 at 5648.620 kb on + strand, within PP_4958 at 5648.620 kb on + strand, within PP_4958 at 5648.823 kb on + strand, within PP_4958 at 5648.823 kb on + strand at 5648.823 kb on + strand, within PP_4958 at 5648.823 kb on + strand, within PP_4958 at 5648.854 kb on + strand, within PP_4958 at 5648.855 kb on - strand, within PP_4958 at 5648.855 kb on - strand, within PP_4958 at 5648.855 kb on - strand, within PP_4958 at 5648.855 kb on - strand, within PP_4958 at 5648.878 kb on + strand, within PP_4958 at 5648.878 kb on + strand, within PP_4958 at 5648.878 kb on + strand, within PP_4958 at 5648.879 kb on - strand, within PP_4958 at 5648.879 kb on - strand, within PP_4958 at 5648.884 kb on + strand, within PP_4958 at 5648.884 kb on + strand, within PP_4958 at 5648.884 kb on + strand, within PP_4958 at 5648.885 kb on - strand, within PP_4958 at 5648.885 kb on - strand, within PP_4958 at 5648.885 kb on - strand, within PP_4958 at 5648.939 kb on - strand, within PP_4958 at 5649.010 kb on + strand, within PP_4958 at 5649.010 kb on + strand, within PP_4958 at 5649.010 kb on + strand, within PP_4958 at 5649.010 kb on + strand, within PP_4958 at 5649.010 kb on + strand, within PP_4958 at 5649.011 kb on - strand, within PP_4958 at 5649.011 kb on - strand, within PP_4958 at 5649.011 kb on - strand, within PP_4958 at 5649.015 kb on + strand at 5649.015 kb on + strand at 5649.015 kb on + strand at 5649.015 kb on + strand at 5649.015 kb on + strand at 5649.015 kb on + strand at 5649.016 kb on - strand at 5649.016 kb on - strand at 5649.016 kb on - strand at 5649.016 kb on - strand at 5649.016 kb on - strand at 5649.016 kb on - strand at 5649.019 kb on - strand at 5649.019 kb on - strand at 5649.019 kb on - strand at 5649.034 kb on + strand at 5649.059 kb on + strand at 5649.127 kb on + strand at 5649.151 kb on + strand at 5649.151 kb on + strand at 5649.152 kb on - strand at 5649.222 kb on - strand at 5649.222 kb on - strand at 5649.222 kb on - strand at 5649.222 kb on - strand at 5649.414 kb on + strand, within PP_4959 at 5649.415 kb on - strand, within PP_4959 at 5649.415 kb on - strand, within PP_4959 at 5649.415 kb on - strand, within PP_4959 at 5649.415 kb on - strand, within PP_4959 at 5649.415 kb on - strand, within PP_4959 at 5649.441 kb on - strand, within PP_4959 at 5649.441 kb on - strand, within PP_4959 at 5649.441 kb on - strand, within PP_4959 at 5649.441 kb on - strand, within PP_4959 at 5649.442 kb on + strand, within PP_4959 at 5649.442 kb on + strand, within PP_4959 at 5649.443 kb on - strand, within PP_4959 at 5649.443 kb on - strand, within PP_4959 at 5649.443 kb on - strand, within PP_4959 at 5649.443 kb on - strand, within PP_4959 at 5649.443 kb on - strand, within PP_4959 at 5649.443 kb on - strand, within PP_4959 at 5649.443 kb on - strand, within PP_4959 at 5649.443 kb on - strand, within PP_4959 at 5649.598 kb on + strand, within PP_4959 at 5649.599 kb on - strand, within PP_4959 at 5649.784 kb on + strand, within PP_4959 at 5649.785 kb on - strand, within PP_4959 at 5649.794 kb on + strand, within PP_4959 at 5649.794 kb on + strand, within PP_4959 at 5649.794 kb on + strand, within PP_4959 at 5649.877 kb on + strand, within PP_4959 at 5649.916 kb on + strand, within PP_4959 at 5649.917 kb on - strand, within PP_4959 at 5649.974 kb on - strand, within PP_4959 at 5650.020 kb on + strand, within PP_4959 at 5650.021 kb on - strand at 5650.252 kb on + strand, within PP_4959 at 5650.252 kb on + strand, within PP_4959 at 5650.252 kb on + strand, within PP_4959 at 5650.252 kb on + strand, within PP_4959 at 5650.252 kb on + strand, within PP_4959 at 5650.252 kb on + strand, within PP_4959 at 5650.253 kb on - strand, within PP_4959 at 5650.253 kb on - strand, within PP_4959 at 5650.253 kb on - strand, within PP_4959 at 5650.253 kb on - strand, within PP_4959 at 5650.355 kb on + strand, within PP_4959 at 5650.356 kb on - strand, within PP_4959 at 5650.356 kb on - strand, within PP_4959 at 5650.389 kb on - strand, within PP_4959 at 5650.510 kb on - strand, within PP_4959 at 5650.534 kb on + strand, within PP_4959 at 5650.544 kb on - strand, within PP_4959 at 5650.544 kb on - strand, within PP_4959 at 5650.849 kb on + strand, within PP_4959 at 5650.849 kb on + strand, within PP_4959 at 5650.849 kb on + strand at 5650.850 kb on - strand, within PP_4959 at 5650.870 kb on + strand, within PP_4959 at 5650.995 kb on + strand at 5650.995 kb on + strand at 5650.995 kb on + strand at 5650.995 kb on + strand at 5650.995 kb on + strand at 5650.995 kb on + strand at 5650.995 kb on + strand at 5650.995 kb on + strand at 5650.996 kb on - strand at 5650.996 kb on - strand at 5650.996 kb on - strand at 5650.996 kb on - strand at 5650.996 kb on - strand at 5650.996 kb on - strand at 5650.996 kb on - strand at 5650.996 kb on - strand at 5650.996 kb on - strand at 5651.050 kb on - strand at 5651.050 kb on - strand at 5651.070 kb on + strand at 5651.070 kb on + strand at 5651.070 kb on + strand at 5651.070 kb on + strand at 5651.071 kb on - strand at 5651.071 kb on - strand at 5651.180 kb on - strand at 5651.206 kb on + strand at 5651.206 kb on + strand at 5651.206 kb on + strand at 5651.206 kb on + strand at 5651.206 kb on + strand at 5651.207 kb on - strand at 5651.207 kb on - strand at 5651.240 kb on + strand at 5651.241 kb on - strand at 5651.243 kb on + strand at 5651.243 kb on + strand at 5651.249 kb on - strand at 5651.249 kb on - strand at 5651.249 kb on - strand at 5651.249 kb on - strand at 5651.303 kb on + strand at 5651.304 kb on - strand at 5651.337 kb on + strand at 5651.395 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 5,648,080 + PP_4956 0.75 -0.5 5,648,080 + PP_4956 0.75 -0.9 5,648,081 - PP_4956 0.75 -0.6 5,648,103 - PP_4956 0.80 -3.1 5,648,103 - PP_4956 0.80 +1.1 5,648,113 + PP_4956 0.82 -1.0 5,648,114 - PP_4956 0.82 +1.3 5,648,378 + PP_4957 0.54 +0.3 5,648,379 - PP_4957 0.55 -0.7 5,648,470 + PP_4957 0.85 +0.3 5,648,471 - PP_4957 0.86 +1.3 5,648,527 + -1.4 5,648,528 - -0.2 5,648,551 + +0.5 5,648,551 + +0.2 5,648,552 - +0.5 5,648,560 + +0.4 5,648,591 - PP_4958 0.12 +1.6 5,648,591 - PP_4958 0.12 -1.9 5,648,620 + PP_4958 0.17 -2.1 5,648,620 + PP_4958 0.17 -1.6 5,648,823 + PP_4958 0.55 -2.9 5,648,823 + +2.5 5,648,823 + PP_4958 0.55 +0.4 5,648,823 + PP_4958 0.55 +0.3 5,648,854 + PP_4958 0.61 +0.6 5,648,855 - PP_4958 0.61 +1.1 5,648,855 - PP_4958 0.61 -2.5 5,648,855 - PP_4958 0.61 -3.7 5,648,855 - PP_4958 0.61 -0.1 5,648,878 + PP_4958 0.65 -3.2 5,648,878 + PP_4958 0.65 -0.7 5,648,878 + PP_4958 0.65 +0.6 5,648,879 - PP_4958 0.65 -0.3 5,648,879 - PP_4958 0.65 -0.3 5,648,884 + PP_4958 0.66 -1.3 5,648,884 + PP_4958 0.66 -3.4 5,648,884 + PP_4958 0.66 +0.5 5,648,885 - PP_4958 0.66 +0.2 5,648,885 - PP_4958 0.66 -1.6 5,648,885 - PP_4958 0.66 -0.0 5,648,939 - PP_4958 0.76 +1.6 5,649,010 + PP_4958 0.90 +0.3 5,649,010 + PP_4958 0.90 +1.3 5,649,010 + PP_4958 0.90 +0.9 5,649,010 + PP_4958 0.90 +0.5 5,649,010 + PP_4958 0.90 -2.6 5,649,011 - PP_4958 0.90 -3.6 5,649,011 - PP_4958 0.90 -3.5 5,649,011 - PP_4958 0.90 +0.1 5,649,015 + -0.1 5,649,015 + +0.6 5,649,015 + -3.1 5,649,015 + +0.7 5,649,015 + -1.2 5,649,015 + +0.3 5,649,016 - -2.1 5,649,016 - -2.5 5,649,016 - +1.4 5,649,016 - +1.2 5,649,016 - +0.0 5,649,016 - -2.1 5,649,019 - +0.1 5,649,019 - -1.2 5,649,019 - -0.2 5,649,034 + -3.5 5,649,059 + +1.9 5,649,127 + +0.4 5,649,151 + -3.4 5,649,151 + +1.4 5,649,152 - +1.4 5,649,222 - +0.1 5,649,222 - -0.6 5,649,222 - -1.5 5,649,222 - +1.9 5,649,414 + PP_4959 0.16 +0.7 5,649,415 - PP_4959 0.16 +0.5 5,649,415 - PP_4959 0.16 -3.2 5,649,415 - PP_4959 0.16 +1.5 5,649,415 - PP_4959 0.16 +0.8 5,649,415 - PP_4959 0.16 +1.2 5,649,441 - PP_4959 0.18 -1.2 5,649,441 - PP_4959 0.18 +1.1 5,649,441 - PP_4959 0.18 +1.4 5,649,441 - PP_4959 0.18 -0.6 5,649,442 + PP_4959 0.18 -1.1 5,649,442 + PP_4959 0.18 -0.8 5,649,443 - PP_4959 0.18 +0.5 5,649,443 - PP_4959 0.18 +0.5 5,649,443 - PP_4959 0.18 -3.1 5,649,443 - PP_4959 0.18 +0.7 5,649,443 - PP_4959 0.18 -0.4 5,649,443 - PP_4959 0.18 +1.6 5,649,443 - PP_4959 0.18 -2.4 5,649,443 - PP_4959 0.18 +0.4 5,649,598 + PP_4959 0.25 -0.5 5,649,599 - PP_4959 0.25 -1.5 5,649,784 + PP_4959 0.34 -1.4 5,649,785 - PP_4959 0.34 -1.3 5,649,794 + PP_4959 0.34 -1.1 5,649,794 + PP_4959 0.34 -1.2 5,649,794 + PP_4959 0.34 -3.5 5,649,877 + PP_4959 0.38 +0.6 5,649,916 + PP_4959 0.40 +0.9 5,649,917 - PP_4959 0.40 +0.1 5,649,974 - PP_4959 0.43 -1.9 5,650,020 + PP_4959 0.45 +1.1 5,650,021 - -0.1 5,650,252 + PP_4959 0.56 +0.2 5,650,252 + PP_4959 0.56 +1.3 5,650,252 + PP_4959 0.56 +1.1 5,650,252 + PP_4959 0.56 +0.4 5,650,252 + PP_4959 0.56 -0.3 5,650,252 + PP_4959 0.56 +1.3 5,650,253 - PP_4959 0.56 -2.3 5,650,253 - PP_4959 0.56 +0.4 5,650,253 - PP_4959 0.56 +1.9 5,650,253 - PP_4959 0.56 +1.3 5,650,355 + PP_4959 0.61 +3.3 5,650,356 - PP_4959 0.61 +1.2 5,650,356 - PP_4959 0.61 -0.4 5,650,389 - PP_4959 0.62 -1.0 5,650,510 - PP_4959 0.68 +1.8 5,650,534 + PP_4959 0.69 -2.8 5,650,544 - PP_4959 0.69 +0.4 5,650,544 - PP_4959 0.69 -1.0 5,650,849 + PP_4959 0.84 -0.2 5,650,849 + PP_4959 0.84 -0.5 5,650,849 + +0.2 5,650,850 - PP_4959 0.84 +0.1 5,650,870 + PP_4959 0.85 +1.3 5,650,995 + +0.1 5,650,995 + -3.9 5,650,995 + -3.4 5,650,995 + -0.2 5,650,995 + -0.8 5,650,995 + +0.4 5,650,995 + +1.3 5,650,995 + -0.2 5,650,996 - -0.1 5,650,996 - +0.3 5,650,996 - -0.5 5,650,996 - +0.1 5,650,996 - +1.7 5,650,996 - -1.4 5,650,996 - -3.3 5,650,996 - +0.1 5,650,996 - +1.6 5,651,050 - -0.3 5,651,050 - -0.9 5,651,070 + -2.1 5,651,070 + -0.0 5,651,070 + -0.4 5,651,070 + +0.8 5,651,071 - -0.8 5,651,071 - +1.6 5,651,180 - +0.1 5,651,206 + -3.4 5,651,206 + -3.0 5,651,206 + -4.1 5,651,206 + +1.0 5,651,206 + +0.5 5,651,207 - +0.1 5,651,207 - -1.6 5,651,240 + +0.5 5,651,241 - +1.2 5,651,243 + +0.0 5,651,243 + -4.0 5,651,249 - +0.6 5,651,249 - -3.3 5,651,249 - -1.0 5,651,249 - +0.9 5,651,303 + +0.2 5,651,304 - +1.2 5,651,337 + +1.6 5,651,395 + -1.6
Or see this region's nucleotide sequence