Strain Fitness in Escherichia coli BW25113 around b2685

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
2,808,515	+	ygaH	b2683	0.44	+0.3
2,808,517	-	ygaH	b2683	0.45	+0.4
2,808,533	+	ygaH	b2683	0.50	+0.1
2,808,533	+	ygaH	b2683	0.50	+0.3
2,808,534	-	ygaH	b2683	0.50	-0.5
2,808,534	-	ygaH	b2683	0.50	+0.1
2,808,560	-	ygaH	b2683	0.58	+0.5
2,808,565	-				-1.0
2,808,645	+	ygaH	b2683	0.83	+0.3
2,808,645	+	ygaH	b2683	0.83	-0.0
2,808,645	+	ygaH	b2683	0.83	+0.3
2,808,648	-	ygaH	b2683	0.84	-0.2
2,808,655	+	ygaH	b2683	0.86	+0.2
2,808,658	-	ygaH	b2683	0.87	+0.5
2,808,660	-	ygaH	b2683	0.88	-0.6
2,808,662	+	ygaH	b2683	0.88	+1.0
2,808,662	+	ygaH	b2683	0.88	+0.1
2,808,671	-				+0.1
2,808,876	-	mprA	b2684	0.16	+0.4
2,809,100	+	mprA	b2684	0.58	+3.4
2,809,100	+	mprA	b2684	0.58	+3.4
2,809,107	+	mprA	b2684	0.59	+3.0
2,809,200	+	mprA	b2684	0.77	+3.7
2,809,287	+				+3.6
2,809,433	-				+0.4
2,809,497	+				-1.0
2,809,497	+				+0.1
2,809,546	-				-0.5
2,809,548	-				-1.8
2,809,748	-	emrA	b2685	0.25	-1.8
2,809,748	-	emrA	b2685	0.25	-1.7
2,809,806	-	emrA	b2685	0.30	-1.3
2,809,931	-	emrA	b2685	0.41	-0.5
2,810,041	+	emrA	b2685	0.50	-2.6
2,810,097	+	emrA	b2685	0.55	-0.8
2,810,097	+	emrA	b2685	0.55	-0.5
2,810,097	+	emrA	b2685	0.55	-0.4
2,810,100	-	emrA	b2685	0.55	+0.2
2,810,100	-	emrA	b2685	0.55	-2.0
2,810,103	-	emrA	b2685	0.56	-0.2
2,810,127	-	emrA	b2685	0.58	-0.8
2,810,147	-	emrA	b2685	0.60	-1.0
2,810,204	-	emrA	b2685	0.64	-1.2
2,810,320	+	emrA	b2685	0.74	-0.4
2,810,339	-	emrA	b2685	0.76	+0.8
2,810,417	-	emrA	b2685	0.83	-1.0
2,810,443	-	emrA	b2685	0.85	-0.8
2,810,480	+	emrA	b2685	0.88	-0.7
2,810,482	-	emrA	b2685	0.88	-0.4
2,810,482	-	emrA	b2685	0.88	-1.6
2,810,503	+	emrA	b2685	0.90	-1.4
2,810,533	+				-0.6
2,810,543	+				-0.7
2,810,543	+				-0.7
2,810,549	-				-0.9
2,810,621	+				-0.0
2,810,633	+				-0.0
2,810,716	+				-0.9
2,810,716	+				-1.3
2,810,724	-				-1.4
2,810,763	-				-1.0
2,810,764	+				-1.5
2,810,764	+				-1.5
2,810,921	+	emrB	b2686	0.18	-1.4
2,811,019	-	emrB	b2686	0.25	-0.9
2,811,019	-	emrB	b2686	0.25	-2.1
2,811,034	+	emrB	b2686	0.26	-1.7
2,811,034	+	emrB	b2686	0.26	-1.0
2,811,151	-	emrB	b2686	0.33	-0.6
2,811,196	-	emrB	b2686	0.36	-0.4
2,811,196	-	emrB	b2686	0.36	-1.4
2,811,310	+	emrB	b2686	0.44	-1.8
2,811,431	-	emrB	b2686	0.52	-0.3
2,811,436	-	emrB	b2686	0.52	-0.3
2,811,505	-	emrB	b2686	0.56	-1.4
2,811,507	-	emrB	b2686	0.56	+0.2
2,811,507	-	emrB	b2686	0.56	-2.8
2,811,528	+				+0.3
2,811,581	-	emrB	b2686	0.61	-0.1