Strain Fitness in Pseudomonas putida KT2440 around PP_4584

Experiment: nitrogen source nitrite 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4583 and PP_4584 are separated by 459 nucleotidesPP_4584 and PP_4585 are separated by 71 nucleotidesPP_4585 and PP_4586 are separated by 114 nucleotides PP_4583: PP_4583 - putative Peptidase, at 5,201,694 to 5,203,736 _4583 PP_4584: PP_4584 - putative endonuclease, at 5,204,196 to 5,204,567 _4584 PP_4585: PP_4585 - RNA methyltransferase, TrmH family, at 5,204,639 to 5,205,109 _4585 PP_4586: PP_4586 - conserved exported protein of unknown function, at 5,205,224 to 5,206,432 _4586 Position (kb) 5204 5205Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5203.425 kb on + strand, within PP_4583at 5203.461 kb on + strand, within PP_4583at 5203.461 kb on + strand, within PP_4583at 5203.461 kb on + strand, within PP_4583at 5203.461 kb on + strand, within PP_4583at 5203.461 kb on + strand, within PP_4583at 5203.479 kb on + strand, within PP_4583at 5203.479 kb on + strand, within PP_4583at 5203.480 kb on - strand, within PP_4583at 5203.560 kb on + strandat 5203.702 kb on - strandat 5203.728 kb on - strandat 5203.739 kb on + strandat 5203.739 kb on + strandat 5203.904 kb on - strandat 5203.904 kb on - strandat 5203.904 kb on - strandat 5203.919 kb on + strandat 5203.919 kb on + strandat 5203.920 kb on - strandat 5203.929 kb on + strandat 5203.939 kb on + strandat 5203.952 kb on + strandat 5203.952 kb on + strandat 5203.982 kb on + strandat 5203.983 kb on - strandat 5204.097 kb on + strandat 5204.098 kb on - strandat 5204.159 kb on + strandat 5204.159 kb on + strandat 5204.302 kb on - strand, within PP_4584at 5204.302 kb on - strand, within PP_4584at 5204.433 kb on + strand, within PP_4584at 5204.433 kb on + strand, within PP_4584at 5204.460 kb on + strand, within PP_4584at 5204.475 kb on + strand, within PP_4584at 5204.519 kb on + strand, within PP_4584at 5204.519 kb on + strand, within PP_4584at 5204.604 kb on + strandat 5204.604 kb on + strandat 5204.605 kb on - strandat 5204.606 kb on + strandat 5204.654 kb on + strandat 5204.726 kb on + strand, within PP_4585at 5204.726 kb on + strand, within PP_4585at 5204.726 kb on + strand, within PP_4585at 5204.727 kb on - strand, within PP_4585at 5204.747 kb on + strand, within PP_4585at 5204.747 kb on + strand, within PP_4585at 5204.748 kb on - strand, within PP_4585at 5204.762 kb on + strand, within PP_4585at 5204.763 kb on - strand, within PP_4585at 5204.763 kb on - strand, within PP_4585at 5204.807 kb on + strand, within PP_4585at 5204.807 kb on + strand, within PP_4585at 5204.808 kb on - strand, within PP_4585at 5204.887 kb on - strand, within PP_4585at 5204.887 kb on - strand, within PP_4585at 5204.912 kb on + strand, within PP_4585at 5204.912 kb on + strand, within PP_4585at 5204.912 kb on + strand, within PP_4585at 5204.932 kb on + strand, within PP_4585at 5204.933 kb on - strand, within PP_4585at 5204.936 kb on + strand, within PP_4585at 5204.937 kb on - strand, within PP_4585at 5204.937 kb on - strand, within PP_4585at 5204.937 kb on - strand, within PP_4585at 5204.937 kb on - strand, within PP_4585at 5204.998 kb on + strand, within PP_4585at 5204.998 kb on + strand, within PP_4585at 5204.998 kb on + strand, within PP_4585at 5204.999 kb on - strand, within PP_4585at 5204.999 kb on - strand, within PP_4585at 5204.999 kb on - strand, within PP_4585at 5204.999 kb on - strand, within PP_4585at 5204.999 kb on - strand, within PP_4585at 5205.002 kb on + strand, within PP_4585at 5205.002 kb on + strand, within PP_4585at 5205.002 kb on + strand, within PP_4585at 5205.002 kb on + strand, within PP_4585at 5205.002 kb on + strand, within PP_4585at 5205.003 kb on - strand, within PP_4585at 5205.003 kb on - strand, within PP_4585at 5205.003 kb on - strand, within PP_4585at 5205.003 kb on - strand, within PP_4585at 5205.003 kb on - strand, within PP_4585at 5205.003 kb on - strand, within PP_4585at 5205.056 kb on + strand, within PP_4585at 5205.056 kb on + strand, within PP_4585at 5205.056 kb on + strand, within PP_4585at 5205.056 kb on + strand, within PP_4585at 5205.056 kb on + strand, within PP_4585at 5205.057 kb on - strand, within PP_4585at 5205.083 kb on - strandat 5205.108 kb on - strandat 5205.176 kb on + strandat 5205.176 kb on + strandat 5205.225 kb on + strandat 5205.335 kb on + strandat 5205.335 kb on + strandat 5205.335 kb on + strandat 5205.336 kb on - strandat 5205.336 kb on - strandat 5205.336 kb on - strandat 5205.336 kb on - strandat 5205.530 kb on + strand, within PP_4586at 5205.546 kb on + strand, within PP_4586at 5205.549 kb on + strand, within PP_4586at 5205.550 kb on - strand, within PP_4586at 5205.567 kb on - strand, within PP_4586

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM
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5,203,425 + PP_4583 0.85 -0.1
5,203,461 + PP_4583 0.86 -0.5
5,203,461 + PP_4583 0.86 +0.4
5,203,461 + PP_4583 0.86 +2.6
5,203,461 + PP_4583 0.86 -1.8
5,203,461 + PP_4583 0.86 -0.7
5,203,479 + PP_4583 0.87 -2.8
5,203,479 + PP_4583 0.87 -1.4
5,203,480 - PP_4583 0.87 -0.9
5,203,560 + +2.0
5,203,702 - +0.4
5,203,728 - +1.6
5,203,739 + +0.2
5,203,739 + +0.1
5,203,904 - -0.1
5,203,904 - -2.0
5,203,904 - +1.0
5,203,919 + +0.4
5,203,919 + -0.3
5,203,920 - -0.0
5,203,929 + +0.5
5,203,939 + -0.6
5,203,952 + -1.9
5,203,952 + +0.7
5,203,982 + +0.2
5,203,983 - +0.0
5,204,097 + -1.5
5,204,098 - -0.5
5,204,159 + -2.1
5,204,159 + +1.4
5,204,302 - PP_4584 0.28 -1.0
5,204,302 - PP_4584 0.28 -3.8
5,204,433 + PP_4584 0.64 -0.6
5,204,433 + PP_4584 0.64 -0.1
5,204,460 + PP_4584 0.71 -0.0
5,204,475 + PP_4584 0.75 -1.9
5,204,519 + PP_4584 0.87 -3.8
5,204,519 + PP_4584 0.87 -0.6
5,204,604 + +1.5
5,204,604 + -1.4
5,204,605 - +0.8
5,204,606 + -0.7
5,204,654 + -2.6
5,204,726 + PP_4585 0.18 -3.0
5,204,726 + PP_4585 0.18 -4.2
5,204,726 + PP_4585 0.18 +0.0
5,204,727 - PP_4585 0.19 +0.9
5,204,747 + PP_4585 0.23 +1.2
5,204,747 + PP_4585 0.23 +0.4
5,204,748 - PP_4585 0.23 +0.4
5,204,762 + PP_4585 0.26 +1.4
5,204,763 - PP_4585 0.26 +1.0
5,204,763 - PP_4585 0.26 -1.4
5,204,807 + PP_4585 0.36 +0.5
5,204,807 + PP_4585 0.36 -0.5
5,204,808 - PP_4585 0.36 -0.7
5,204,887 - PP_4585 0.53 +0.3
5,204,887 - PP_4585 0.53 +0.3
5,204,912 + PP_4585 0.58 +0.4
5,204,912 + PP_4585 0.58 +1.0
5,204,912 + PP_4585 0.58 -0.9
5,204,932 + PP_4585 0.62 -1.2
5,204,933 - PP_4585 0.62 -3.0
5,204,936 + PP_4585 0.63 +0.8
5,204,937 - PP_4585 0.63 -3.2
5,204,937 - PP_4585 0.63 -4.4
5,204,937 - PP_4585 0.63 +0.2
5,204,937 - PP_4585 0.63 +0.8
5,204,998 + PP_4585 0.76 -1.7
5,204,998 + PP_4585 0.76 +0.3
5,204,998 + PP_4585 0.76 +1.4
5,204,999 - PP_4585 0.76 +1.0
5,204,999 - PP_4585 0.76 +1.9
5,204,999 - PP_4585 0.76 +0.0
5,204,999 - PP_4585 0.76 -0.7
5,204,999 - PP_4585 0.76 +0.8
5,205,002 + PP_4585 0.77 +0.4
5,205,002 + PP_4585 0.77 -3.8
5,205,002 + PP_4585 0.77 +0.9
5,205,002 + PP_4585 0.77 +0.5
5,205,002 + PP_4585 0.77 -2.4
5,205,003 - PP_4585 0.77 -0.0
5,205,003 - PP_4585 0.77 -0.8
5,205,003 - PP_4585 0.77 +0.0
5,205,003 - PP_4585 0.77 +1.3
5,205,003 - PP_4585 0.77 -2.8
5,205,003 - PP_4585 0.77 +1.4
5,205,056 + PP_4585 0.89 +0.2
5,205,056 + PP_4585 0.89 -3.8
5,205,056 + PP_4585 0.89 +0.4
5,205,056 + PP_4585 0.89 +0.2
5,205,056 + PP_4585 0.89 -0.4
5,205,057 - PP_4585 0.89 +0.2
5,205,083 - -2.5
5,205,108 - -0.4
5,205,176 + -0.9
5,205,176 + +0.8
5,205,225 + +0.8
5,205,335 + -0.2
5,205,335 + +0.3
5,205,335 + +0.5
5,205,336 - +0.2
5,205,336 - +0.9
5,205,336 - +0.8
5,205,336 - +0.7
5,205,530 + PP_4586 0.25 -1.2
5,205,546 + PP_4586 0.27 -3.0
5,205,549 + PP_4586 0.27 -0.2
5,205,550 - PP_4586 0.27 -4.1
5,205,567 - PP_4586 0.28 +0.9

Or see this region's nucleotide sequence