Strain Fitness in Escherichia coli BW25113 around b3156

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
3,297,295	-	yhbO	b3153	0.58	+0.7
3,297,383	-	yhbO	b3153	0.75	+1.2
3,297,383	-	yhbO	b3153	0.75	-0.7
3,297,383	-	yhbO	b3153	0.75	+0.1
3,297,395	-	yhbO	b3153	0.77	+0.1
3,297,395	-	yhbO	b3153	0.77	+0.0
3,297,432	+	yhbO	b3153	0.84	-0.5
3,297,491	+				+2.2
3,297,491	+				+0.1
3,297,515	-				+0.4
3,297,553	-	yhbP	b3154	0.13	+0.6
3,297,632	+	yhbP	b3154	0.31	+0.7
3,297,632	+	yhbP	b3154	0.31	+0.2
3,297,639	+	yhbP	b3154	0.33	+0.9
3,297,667	+	yhbP	b3154	0.39	-0.1
3,297,740	-	yhbP	b3154	0.55	+0.8
3,297,740	-	yhbP	b3154	0.55	+0.4
3,297,770	+	yhbP	b3154	0.62	+0.9
3,297,842	+	yhbP	b3154	0.78	+0.3
3,297,852	+	yhbP	b3154	0.81	+1.3
3,297,857	+	yhbP	b3154	0.82	+0.9
3,297,879	+	yhbP	b3154	0.87	-0.7
3,297,889	-	yhbP	b3154	0.89	+0.4
3,297,889	-	yhbP	b3154	0.89	-0.0
3,297,960	+				+0.4
3,297,967	+				-0.1
3,297,967	+				-0.1
3,297,974	-				+1.2
3,298,077	+	yhbQ	b3155	0.29	-2.5
3,298,077	+	yhbQ	b3155	0.29	-1.9
3,298,121	+	yhbQ	b3155	0.44	+0.5
3,298,129	+	yhbQ	b3155	0.47	+0.6
3,298,129	+	yhbQ	b3155	0.47	-2.1
3,298,238	+	yhbQ	b3155	0.83	+0.1
3,298,238	+	yhbQ	b3155	0.83	+0.2
3,298,249	+	yhbQ	b3155	0.86	-0.1
3,298,298	+				-0.4
3,298,298	+				+0.6
3,298,304	-				+0.1
3,298,339	+	yhbS	b3156	0.12	+0.1
3,298,411	+	yhbS	b3156	0.27	+0.5
3,298,411	+	yhbS	b3156	0.27	+0.9
3,298,427	+	yhbS	b3156	0.30	-0.0
3,298,435	-	yhbS	b3156	0.31	+0.5
3,298,459	-	yhbS	b3156	0.36	+0.5
3,298,483	-	yhbS	b3156	0.41	-0.7
3,298,485	-	yhbS	b3156	0.41	-0.5
3,298,495	-	yhbS	b3156	0.43	+0.3
3,298,497	+	yhbS	b3156	0.44	-0.5
3,298,504	-	yhbS	b3156	0.45	+0.4
3,298,578	+	yhbS	b3156	0.60	+0.1
3,298,578	+	yhbS	b3156	0.60	-0.5
3,298,591	-	yhbS	b3156	0.62	+0.0
3,298,635	-	yhbS	b3156	0.71	-0.8
3,298,635	-	yhbS	b3156	0.71	+0.1
3,298,649	-	yhbS	b3156	0.74	+0.8
3,298,724	+	yhbS	b3156	0.89	+0.6
3,298,737	+				+0.2
3,298,737	+				+1.4
3,298,858	+	yhbT	b3157	0.16	-0.8
3,298,864	+	yhbT	b3157	0.17	-2.1
3,298,951	-	yhbT	b3157	0.34	+0.5
3,299,033	-	yhbT	b3157	0.49	+0.2
3,299,033	-	yhbT	b3157	0.49	+0.5
3,299,115	+	yhbT	b3157	0.65	-4.1
3,299,123	-	yhbT	b3157	0.66	+0.3
3,299,123	-	yhbT	b3157	0.66	+0.7
3,299,220	-	yhbT	b3157	0.85	-0.2
3,299,399	-				+0.5
3,299,399	-				+1.1
3,299,515	+				+0.1
3,299,515	+				-0.6
3,299,550	-				-0.1
3,299,626	+	yhbU	b3158	0.12	-1.2