Experiment: nitrogen source Ammonium chloride 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4799 and PP_4800 are separated by 98 nucleotides PP_4800 and PP_4801 are separated by 2 nucleotides PP_4801 and PP_4802 overlap by 4 nucleotides PP_4802 and PP_4803 are separated by 73 nucleotides
PP_4799: PP_4799 - putative Muramoyltetrapeptide carboxypeptidase, at 5,462,411 to 5,463,349
_4799
PP_4800: PP_4800 - Lipoyl synthase, at 5,463,448 to 5,464,464
_4800
PP_4801: PP_4801 - Octanoyltransferase, at 5,464,467 to 5,465,117
_4801
PP_4802: PP_4802 - putative lipoate regulatory protein, at 5,465,114 to 5,465,389
_4802
PP_4803: PP_4803 - D-alanyl-D-alanine carboxypeptidase, at 5,465,463 to 5,466,623
_4803
Position (kb) 5463
5464
5465 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5462.492 kb on + strand at 5462.492 kb on + strand at 5462.493 kb on - strand at 5462.493 kb on - strand at 5462.493 kb on - strand at 5462.558 kb on - strand, within PP_4799 at 5462.558 kb on - strand, within PP_4799 at 5462.558 kb on - strand, within PP_4799 at 5462.590 kb on + strand, within PP_4799 at 5462.591 kb on - strand, within PP_4799 at 5462.973 kb on + strand, within PP_4799 at 5462.983 kb on + strand, within PP_4799 at 5462.984 kb on - strand, within PP_4799 at 5463.202 kb on + strand, within PP_4799 at 5463.202 kb on + strand, within PP_4799 at 5463.437 kb on + strand at 5463.445 kb on - strand at 5463.445 kb on - strand at 5463.445 kb on - strand at 5463.445 kb on - strand at 5463.445 kb on - strand at 5463.445 kb on - strand at 5464.505 kb on - strand at 5465.407 kb on - strand at 5465.462 kb on - strand at 5465.462 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source Ammonium chloride 20mM remove 5,462,492 + -3.1 5,462,492 + -3.0 5,462,493 - -1.1 5,462,493 - -2.1 5,462,493 - -0.9 5,462,558 - PP_4799 0.16 -2.6 5,462,558 - PP_4799 0.16 -4.0 5,462,558 - PP_4799 0.16 -2.6 5,462,590 + PP_4799 0.19 -3.5 5,462,591 - PP_4799 0.19 -3.9 5,462,973 + PP_4799 0.60 -3.0 5,462,983 + PP_4799 0.61 -1.7 5,462,984 - PP_4799 0.61 -1.8 5,463,202 + PP_4799 0.84 -2.9 5,463,202 + PP_4799 0.84 -3.1 5,463,437 + -1.3 5,463,445 - +0.9 5,463,445 - +0.2 5,463,445 - +0.7 5,463,445 - +0.3 5,463,445 - -0.7 5,463,445 - -0.0 5,464,505 - -0.6 5,465,407 - +0.4 5,465,462 - +1.5 5,465,462 - -0.3
Or see this region's nucleotide sequence