Strain Fitness in Pseudomonas putida KT2440 around PP_2486

Experiment: nitrogen source Ammonium chloride 20mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source Ammonium chloride 20mM
2,831,756	-				-0.6
2,831,756	-				-0.3
2,831,760	+				-0.2
2,831,761	-				+0.6
2,831,806	+		PP_2485	0.14	-0.9
2,831,807	-		PP_2485	0.14	+0.2
2,831,830	+		PP_2485	0.16	-0.4
2,831,830	+		PP_2485	0.16	-0.3
2,831,831	-		PP_2485	0.16	-0.9
2,831,831	-		PP_2485	0.16	-0.5
2,831,837	+		PP_2485	0.17	+0.7
2,831,838	-		PP_2485	0.17	-1.3
2,831,849	+		PP_2485	0.18	-0.1
2,831,850	-		PP_2485	0.18	-0.3
2,831,850	-		PP_2485	0.18	+0.1
2,831,857	+		PP_2485	0.19	+0.3
2,831,858	-		PP_2485	0.19	+0.9
2,831,896	+		PP_2485	0.23	+0.3
2,831,897	-		PP_2485	0.23	-0.1
2,831,899	-		PP_2485	0.23	-0.0
2,831,926	+		PP_2485	0.26	-0.6
2,831,926	+		PP_2485	0.26	+0.4
2,831,927	-		PP_2485	0.26	-0.5
2,831,945	+		PP_2485	0.28	-0.1
2,831,982	-		PP_2485	0.32	-0.5
2,832,000	+		PP_2485	0.34	-0.8
2,832,001	-		PP_2485	0.34	+0.5
2,832,075	-		PP_2485	0.41	+1.1
2,832,075	-		PP_2485	0.41	-0.5
2,832,088	+		PP_2485	0.43	+0.6
2,832,341	-		PP_2485	0.68	+0.1
2,832,362	+		PP_2485	0.70	+0.2
2,832,362	+				-0.2
2,832,363	-		PP_2485	0.71	-0.2
2,832,379	+		PP_2485	0.72	-1.5
2,832,379	+		PP_2485	0.72	-0.1
2,832,393	+		PP_2485	0.74	-0.3
2,832,393	+		PP_2485	0.74	+0.1
2,832,393	+		PP_2485	0.74	-0.4
2,832,393	+		PP_2485	0.74	+0.8
2,832,394	-		PP_2485	0.74	+0.3
2,832,394	-		PP_2485	0.74	-0.5
2,832,402	+		PP_2485	0.74	+0.6
2,832,403	-		PP_2485	0.75	-0.5
2,832,516	-		PP_2485	0.86	+0.4
2,832,524	+		PP_2485	0.87	+0.0
2,832,524	+		PP_2485	0.87	-0.4
2,832,524	+		PP_2485	0.87	+0.1
2,832,524	+		PP_2485	0.87	+0.5
2,832,525	-		PP_2485	0.87	-0.1
2,832,525	-		PP_2485	0.87	-0.7
2,832,525	-		PP_2485	0.87	+0.4
2,832,539	-		PP_2485	0.88	-0.4
2,832,557	+				+0.8
2,832,582	-				+0.8
2,832,582	-				+0.8
2,832,582	-				-0.6
2,832,616	+				-0.3
2,832,627	+				-0.7
2,832,648	+				-0.5
2,832,649	-				-1.2
2,832,656	+				+1.2
2,832,656	+				-0.0
2,832,656	+				-0.2
2,832,656	+				-0.4
2,832,656	+				-1.5
2,832,657	-				-0.4
2,832,698	-				-1.0
2,832,754	+				+0.3
2,832,768	+				-0.9
2,832,768	+				+0.1
2,832,794	-				-0.7
2,832,884	+		PP_2486	0.15	+0.3
2,832,912	+		PP_2486	0.17	-0.0
2,832,913	-		PP_2486	0.17	-0.5
2,832,924	+		PP_2486	0.18	-0.3
2,832,949	+		PP_2486	0.20	+1.1
2,832,949	+				+1.4
2,832,950	-		PP_2486	0.21	-0.3
2,832,950	-		PP_2486	0.21	+0.3
2,832,950	-		PP_2486	0.21	-0.0
2,833,021	-		PP_2486	0.27	+0.2
2,833,094	+		PP_2486	0.33	-0.5
2,833,094	+		PP_2486	0.33	-0.6
2,833,095	-		PP_2486	0.33	-1.0
2,833,098	+		PP_2486	0.34	-0.6
2,833,098	+		PP_2486	0.34	-1.6
2,833,099	-		PP_2486	0.34	-0.0
2,833,101	-		PP_2486	0.34	-0.1
2,833,230	+		PP_2486	0.45	-0.1
2,833,253	-		PP_2486	0.47	+0.3
2,833,253	-		PP_2486	0.47	-0.7
2,833,253	-		PP_2486	0.47	+0.1
2,833,350	+		PP_2486	0.56	+0.4
2,833,358	-		PP_2486	0.57	-0.2
2,833,358	-		PP_2486	0.57	-0.5
2,833,370	+		PP_2486	0.58	+0.2
2,833,371	-				-1.2
2,833,588	+		PP_2486	0.77	+0.4
2,833,601	+		PP_2486	0.78	-0.9
2,833,601	+		PP_2486	0.78	+1.0
2,833,601	+		PP_2486	0.78	-0.1
2,833,602	-		PP_2486	0.78	+0.3
2,833,602	-		PP_2486	0.78	-1.4
2,833,602	-		PP_2486	0.78	+0.0
2,833,602	-		PP_2486	0.78	+0.2
2,833,602	-		PP_2486	0.78	-0.7
2,833,602	-		PP_2486	0.78	+0.2
2,833,615	+		PP_2486	0.80	+0.2
2,833,707	+		PP_2486	0.88	+0.4
2,833,710	+		PP_2486	0.88	-1.9
2,833,710	+		PP_2486	0.88	+1.6
2,833,710	+		PP_2486	0.88	+0.8
2,833,711	-		PP_2486	0.88	+0.3
2,833,711	-		PP_2486	0.88	-0.4
2,833,711	-		PP_2486	0.88	+0.4
2,833,778	+				+0.2
2,833,783	+				+1.3
2,833,800	+				-0.5
2,833,800	+				-0.7
2,833,800	+				+0.1
2,833,801	-				-0.1
2,833,801	-				-0.4
2,833,801	-				-0.6
2,833,801	-				-0.8
2,833,858	+				+0.2
2,833,863	-				-0.7
2,833,943	+				+0.4
2,833,943	+				-0.8
2,833,944	-				+0.5
2,833,944	-				+0.4
2,833,964	+				+0.7
2,833,964	+				-1.1
2,833,964	+				-0.0
2,833,964	+				+1.6
2,833,964	+				-0.4
2,833,964	+				-0.5
2,834,015	+				-0.8
2,834,051	+				-0.3
2,834,052	-				-0.6
2,834,052	-				-0.3
2,834,052	-				-0.8
2,834,052	-				-0.1
2,834,055	+				+0.3
2,834,055	+				+0.8
2,834,055	+				+0.3
2,834,055	+				-0.1
2,834,055	+				+0.5
2,834,055	+				+0.2
2,834,056	-				-0.4
2,834,056	-				+0.5
2,834,056	-				-0.0
2,834,056	-				-0.1
2,834,059	+		PP_2487	0.10	+0.5
2,834,060	-		PP_2487	0.10	-0.4
2,834,060	-		PP_2487	0.10	-0.7
2,834,067	+				-0.5
2,834,067	+		PP_2487	0.11	-0.0
2,834,067	+		PP_2487	0.11	-0.6
2,834,067	+		PP_2487	0.11	+1.2
2,834,067	+		PP_2487	0.11	+1.0
2,834,068	+		PP_2487	0.11	-1.0
2,834,068	-		PP_2487	0.11	-0.4
2,834,068	-		PP_2487	0.11	+0.8
2,834,068	-		PP_2487	0.11	-0.4
2,834,145	-		PP_2487	0.16	-0.5
2,834,228	+		PP_2487	0.21	+0.2
2,834,229	-		PP_2487	0.21	+1.5
2,834,242	-		PP_2487	0.22	-1.5
2,834,242	-		PP_2487	0.22	-0.6
2,834,294	+		PP_2487	0.26	-0.5
2,834,307	+		PP_2487	0.27	+0.7
2,834,307	+		PP_2487	0.27	+0.0
2,834,308	-		PP_2487	0.27	-0.1
2,834,308	-		PP_2487	0.27	-0.9
2,834,329	+		PP_2487	0.28	+0.5
2,834,330	-		PP_2487	0.28	+0.8
2,834,330	-		PP_2487	0.28	+0.6
2,834,364	-		PP_2487	0.30	-0.6
2,834,457	+		PP_2487	0.36	+0.1
2,834,457	+		PP_2487	0.36	+0.1
2,834,457	+		PP_2487	0.36	+0.7
2,834,457	+		PP_2487	0.36	-0.1
2,834,458	-		PP_2487	0.37	+0.8
2,834,486	+		PP_2487	0.38	-0.2
2,834,486	+		PP_2487	0.38	+0.5
2,834,486	+		PP_2487	0.38	+0.5
2,834,713	+		PP_2487	0.53	+0.0
2,834,713	+		PP_2487	0.53	+0.7
2,834,714	-				+0.8
2,834,732	-		PP_2487	0.55	-1.0
2,834,755	+		PP_2487	0.56	-0.4
2,834,791	+		PP_2487	0.59	-1.4
2,834,792	-		PP_2487	0.59	+0.2
2,834,792	-		PP_2487	0.59	+0.3
2,834,792	-		PP_2487	0.59	-0.4
2,834,812	+		PP_2487	0.60	+0.5
2,834,828	-		PP_2487	0.61	-0.9