Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rsxC and rsxD are separated by 0 nucleotides rsxD and rsxG are separated by 3 nucleotides rsxG and rsxE are separated by 3 nucleotides
b1629: rsxC - electron transport complex protein RnfC (NCBI), at 1,704,943 to 1,707,165
rsxC
b1630: rsxD - electron transport complex protein RnfD (NCBI), at 1,707,166 to 1,708,224
rsxD
b1631: rsxG - electron transport complex protein RnfG (NCBI), at 1,708,228 to 1,708,848
rsxG
b1632: rsxE - NADH-ubiquinone oxidoreductase (NCBI), at 1,708,852 to 1,709,547
rsxE
Position (kb) 1707
1708
1709 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1706.363 kb on + strand, within rsxC at 1706.547 kb on - strand, within rsxC at 1706.829 kb on + strand, within rsxC at 1706.859 kb on + strand, within rsxC at 1706.859 kb on + strand, within rsxC at 1706.883 kb on - strand, within rsxC at 1706.883 kb on - strand, within rsxC at 1706.924 kb on + strand, within rsxC at 1707.252 kb on + strand at 1707.252 kb on + strand at 1707.328 kb on + strand, within rsxD at 1707.414 kb on + strand, within rsxD at 1707.414 kb on + strand, within rsxD at 1707.473 kb on - strand, within rsxD at 1707.579 kb on - strand, within rsxD at 1707.696 kb on - strand, within rsxD at 1707.716 kb on + strand, within rsxD at 1707.793 kb on + strand, within rsxD at 1707.803 kb on - strand, within rsxD at 1707.895 kb on + strand, within rsxD at 1707.914 kb on - strand, within rsxD at 1707.924 kb on + strand, within rsxD at 1708.021 kb on + strand, within rsxD at 1708.161 kb on + strand at 1708.161 kb on + strand at 1708.187 kb on - strand at 1708.227 kb on - strand at 1708.253 kb on + strand at 1708.253 kb on + strand at 1708.996 kb on - strand, within rsxE at 1709.004 kb on + strand, within rsxE at 1709.034 kb on - strand, within rsxE at 1709.096 kb on + strand, within rsxE at 1709.096 kb on + strand, within rsxE at 1709.106 kb on - strand, within rsxE at 1709.123 kb on + strand, within rsxE at 1709.128 kb on + strand, within rsxE at 1709.182 kb on + strand, within rsxE
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM remove 1,706,363 + rsxC b1629 0.64 -0.8 1,706,547 - rsxC b1629 0.72 -0.0 1,706,829 + rsxC b1629 0.85 +0.7 1,706,859 + rsxC b1629 0.86 +0.3 1,706,859 + rsxC b1629 0.86 +0.0 1,706,883 - rsxC b1629 0.87 -0.4 1,706,883 - rsxC b1629 0.87 +0.4 1,706,924 + rsxC b1629 0.89 +0.0 1,707,252 + +2.6 1,707,252 + -1.4 1,707,328 + rsxD b1630 0.15 -2.0 1,707,414 + rsxD b1630 0.23 -0.4 1,707,414 + rsxD b1630 0.23 +0.9 1,707,473 - rsxD b1630 0.29 +0.6 1,707,579 - rsxD b1630 0.39 +0.7 1,707,696 - rsxD b1630 0.50 -2.4 1,707,716 + rsxD b1630 0.52 +0.3 1,707,793 + rsxD b1630 0.59 -0.0 1,707,803 - rsxD b1630 0.60 -0.1 1,707,895 + rsxD b1630 0.69 -2.9 1,707,914 - rsxD b1630 0.71 -0.6 1,707,924 + rsxD b1630 0.72 +0.5 1,708,021 + rsxD b1630 0.81 -0.1 1,708,161 + +0.4 1,708,161 + +0.2 1,708,187 - -0.3 1,708,227 - +0.2 1,708,253 + -0.0 1,708,253 + +0.3 1,708,996 - rsxE b1632 0.21 +0.5 1,709,004 + rsxE b1632 0.22 +0.3 1,709,034 - rsxE b1632 0.26 +0.5 1,709,096 + rsxE b1632 0.35 +0.0 1,709,096 + rsxE b1632 0.35 +0.1 1,709,106 - rsxE b1632 0.36 +0.7 1,709,123 + rsxE b1632 0.39 +0.8 1,709,128 + rsxE b1632 0.40 +0.1 1,709,182 + rsxE b1632 0.47 +0.8
Or see this region's nucleotide sequence