Strain Fitness in Escherichia coli BW25113 around b4337

Experiment: 1/10ON stiff

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjiN and yjiO are separated by 40 nucleotidesyjiO and yjiP are separated by 478 nucleotides b4336: yjiN - conserved inner membrane protein (NCBI), at 4,563,989 to 4,565,269 yjiN b4337: yjiO - multidrug efflux system protein (NCBI), at 4,565,310 to 4,566,542 yjiO b4339: yjiP - predicted transposase (RefSeq), at 4,567,021 to 4,567,941 yjiP Position (kb) 4565 4566 4567Strain fitness (log2 ratio) -1 0 1 2at 4564.364 kb on - strand, within yjiNat 4564.466 kb on + strand, within yjiNat 4564.468 kb on + strand, within yjiNat 4564.468 kb on + strand, within yjiNat 4564.470 kb on + strand, within yjiNat 4564.566 kb on + strand, within yjiNat 4564.574 kb on - strand, within yjiNat 4564.579 kb on - strand, within yjiNat 4564.607 kb on + strand, within yjiNat 4564.650 kb on + strand, within yjiNat 4564.650 kb on + strand, within yjiNat 4564.682 kb on - strand, within yjiNat 4564.720 kb on + strand, within yjiNat 4564.740 kb on + strand, within yjiNat 4564.890 kb on - strand, within yjiNat 4565.205 kb on - strandat 4565.365 kb on + strandat 4565.365 kb on + strandat 4565.485 kb on - strand, within yjiOat 4565.485 kb on - strand, within yjiOat 4565.494 kb on - strand, within yjiOat 4565.598 kb on + strand, within yjiOat 4565.598 kb on + strand, within yjiOat 4565.623 kb on + strand, within yjiOat 4565.640 kb on + strand, within yjiOat 4565.778 kb on - strand, within yjiOat 4565.778 kb on - strand, within yjiOat 4566.224 kb on + strand, within yjiOat 4566.273 kb on - strand, within yjiOat 4566.273 kb on - strand, within yjiOat 4566.322 kb on - strand, within yjiOat 4566.363 kb on - strand, within yjiOat 4566.371 kb on + strand, within yjiOat 4566.447 kb on + strandat 4566.447 kb on + strandat 4566.470 kb on + strandat 4566.470 kb on + strandat 4566.560 kb on - strandat 4566.613 kb on + strandat 4566.617 kb on + strandat 4566.655 kb on + strandat 4566.665 kb on + strandat 4566.666 kb on + strandat 4566.669 kb on + strandat 4566.673 kb on + strandat 4566.673 kb on + strandat 4566.682 kb on + strandat 4566.682 kb on + strandat 4566.834 kb on + strandat 4566.834 kb on + strandat 4566.860 kb on - strandat 4566.865 kb on + strandat 4566.865 kb on - strandat 4566.866 kb on + strandat 4566.894 kb on + strandat 4566.894 kb on + strandat 4566.968 kb on + strandat 4566.968 kb on + strandat 4566.988 kb on - strandat 4567.039 kb on + strandat 4567.043 kb on - strandat 4567.046 kb on - strandat 4567.048 kb on - strandat 4567.080 kb on + strandat 4567.080 kb on + strandat 4567.080 kb on + strandat 4567.080 kb on + strandat 4567.080 kb on + strandat 4567.080 kb on + strandat 4567.080 kb on + strandat 4567.080 kb on + strandat 4567.080 kb on + strandat 4567.080 kb on + strandat 4567.080 kb on + strandat 4567.080 kb on + strandat 4567.088 kb on - strandat 4567.088 kb on - strandat 4567.088 kb on - strandat 4567.105 kb on + strandat 4567.137 kb on + strand, within yjiPat 4567.137 kb on + strand, within yjiPat 4567.195 kb on + strand, within yjiPat 4567.195 kb on + strand, within yjiPat 4567.197 kb on + strand, within yjiPat 4567.246 kb on - strand, within yjiPat 4567.265 kb on + strand, within yjiPat 4567.296 kb on - strand, within yjiPat 4567.308 kb on + strand, within yjiPat 4567.334 kb on + strand, within yjiPat 4567.337 kb on + strand, within yjiPat 4567.344 kb on + strand, within yjiPat 4567.344 kb on + strand, within yjiPat 4567.345 kb on - strand, within yjiPat 4567.345 kb on - strand, within yjiPat 4567.366 kb on - strand, within yjiPat 4567.406 kb on + strand, within yjiPat 4567.418 kb on + strand, within yjiPat 4567.491 kb on + strand, within yjiPat 4567.508 kb on + strand, within yjiPat 4567.508 kb on + strand, within yjiPat 4567.523 kb on + strand, within yjiPat 4567.523 kb on + strand, within yjiPat 4567.525 kb on + strand, within yjiP

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Per-strain Table

Position Strand Gene LocusTag Fraction 1/10ON stiff
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4,564,364 - yjiN b4336 0.29 +1.0
4,564,466 + yjiN b4336 0.37 +0.2
4,564,468 + yjiN b4336 0.37 +0.3
4,564,468 + yjiN b4336 0.37 +0.4
4,564,470 + yjiN b4336 0.38 -0.5
4,564,566 + yjiN b4336 0.45 +0.5
4,564,574 - yjiN b4336 0.46 +0.5
4,564,579 - yjiN b4336 0.46 -0.1
4,564,607 + yjiN b4336 0.48 +0.6
4,564,650 + yjiN b4336 0.52 -0.2
4,564,650 + yjiN b4336 0.52 +0.5
4,564,682 - yjiN b4336 0.54 +0.3
4,564,720 + yjiN b4336 0.57 -0.7
4,564,740 + yjiN b4336 0.59 -1.1
4,564,890 - yjiN b4336 0.70 +0.1
4,565,205 - +0.9
4,565,365 + +0.7
4,565,365 + -1.1
4,565,485 - yjiO b4337 0.14 +1.5
4,565,485 - yjiO b4337 0.14 +1.4
4,565,494 - yjiO b4337 0.15 -0.2
4,565,598 + yjiO b4337 0.23 +0.0
4,565,598 + yjiO b4337 0.23 -0.2
4,565,623 + yjiO b4337 0.25 -0.1
4,565,640 + yjiO b4337 0.27 +0.3
4,565,778 - yjiO b4337 0.38 +0.2
4,565,778 - yjiO b4337 0.38 -0.1
4,566,224 + yjiO b4337 0.74 +0.2
4,566,273 - yjiO b4337 0.78 -0.7
4,566,273 - yjiO b4337 0.78 +0.2
4,566,322 - yjiO b4337 0.82 +0.8
4,566,363 - yjiO b4337 0.85 -0.1
4,566,371 + yjiO b4337 0.86 +1.5
4,566,447 + -0.1
4,566,447 + +1.9
4,566,470 + +0.3
4,566,470 + -0.2
4,566,560 - +0.7
4,566,613 + +1.4
4,566,617 + +0.5
4,566,655 + +0.9
4,566,665 + +0.4
4,566,666 + +0.4
4,566,669 + -0.1
4,566,673 + +0.5
4,566,673 + +2.2
4,566,682 + +0.4
4,566,682 + +0.0
4,566,834 + -1.7
4,566,834 + -0.3
4,566,860 - -0.9
4,566,865 + +0.2
4,566,865 - +1.2
4,566,866 + +0.5
4,566,894 + -0.7
4,566,894 + -0.6
4,566,968 + -0.1
4,566,968 + +1.3
4,566,988 - +0.5
4,567,039 + -1.4
4,567,043 - +0.9
4,567,046 - -1.2
4,567,048 - -0.6
4,567,080 + +0.9
4,567,080 + -1.2
4,567,080 + -0.6
4,567,080 + +1.9
4,567,080 + -0.1
4,567,080 + -0.4
4,567,080 + +0.4
4,567,080 + +1.5
4,567,080 + +1.1
4,567,080 + -1.7
4,567,080 + +1.9
4,567,080 + +0.0
4,567,088 - +1.5
4,567,088 - +0.6
4,567,088 - +0.4
4,567,105 + +0.3
4,567,137 + yjiP b4339 0.13 +0.6
4,567,137 + yjiP b4339 0.13 -1.1
4,567,195 + yjiP b4339 0.19 +1.2
4,567,195 + yjiP b4339 0.19 +2.6
4,567,197 + yjiP b4339 0.19 +0.3
4,567,246 - yjiP b4339 0.24 +0.6
4,567,265 + yjiP b4339 0.26 -0.1
4,567,296 - yjiP b4339 0.30 +0.8
4,567,308 + yjiP b4339 0.31 -0.2
4,567,334 + yjiP b4339 0.34 +0.5
4,567,337 + yjiP b4339 0.34 +2.0
4,567,344 + yjiP b4339 0.35 -1.1
4,567,344 + yjiP b4339 0.35 -0.6
4,567,345 - yjiP b4339 0.35 -0.2
4,567,345 - yjiP b4339 0.35 +0.4
4,567,366 - yjiP b4339 0.37 +1.0
4,567,406 + yjiP b4339 0.42 +1.5
4,567,418 + yjiP b4339 0.43 +0.9
4,567,491 + yjiP b4339 0.51 -0.2
4,567,508 + yjiP b4339 0.53 -1.1
4,567,508 + yjiP b4339 0.53 +0.9
4,567,523 + yjiP b4339 0.55 +0.2
4,567,523 + yjiP b4339 0.55 -0.0
4,567,525 + yjiP b4339 0.55 +0.9

Or see this region's nucleotide sequence