Strain Fitness in Escherichia coli BW25113 around b4312
Experiment: 1/10ON stiff
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 1/10ON stiff |
---|---|---|---|---|---|
remove | |||||
4,538,254 | + | +0.3 | |||
4,538,254 | + | -2.9 | |||
4,538,359 | + | -0.2 | |||
4,538,373 | + | -0.2 | |||
4,538,374 | + | +0.3 | |||
4,538,375 | + | +0.4 | |||
4,538,379 | + | +0.7 | |||
4,538,379 | + | -0.9 | |||
4,538,442 | + | -1.5 | |||
4,538,444 | + | +0.5 | |||
4,538,444 | + | +1.4 | |||
4,538,451 | + | -1.7 | |||
4,538,478 | + | -1.9 | |||
4,538,488 | + | -0.3 | |||
4,538,533 | + | -0.5 | |||
4,538,533 | + | -1.0 | |||
4,538,571 | + | -0.1 | |||
4,538,599 | + | -0.1 | |||
4,538,599 | + | +0.5 | |||
4,538,599 | + | -0.1 | |||
4,538,610 | + | -1.8 | |||
4,538,610 | + | -1.6 | |||
4,538,613 | + | -0.8 | |||
4,538,666 | + | +1.9 | |||
4,538,668 | + | -1.1 | |||
4,538,677 | + | -0.1 | |||
4,538,677 | + | -0.1 | |||
4,538,684 | + | -0.1 | |||
4,538,717 | + | -1.4 | |||
4,538,735 | + | -0.2 | |||
4,538,737 | + | +0.3 | |||
4,538,746 | + | -0.2 | |||
4,538,746 | + | +1.0 | |||
4,538,778 | + | +1.5 | |||
4,538,778 | + | -1.4 | |||
4,538,778 | + | +0.2 | |||
4,538,778 | + | -0.7 | |||
4,538,780 | + | -0.1 | |||
4,538,780 | + | -0.1 | |||
4,538,780 | + | -0.1 | |||
4,538,781 | + | +0.5 | |||
4,538,781 | + | -0.1 | |||
4,538,834 | + | -0.1 | |||
4,538,849 | + | -0.1 | |||
4,538,849 | + | -0.1 | |||
4,538,849 | + | -0.1 | |||
4,538,859 | + | -1.1 | |||
4,538,859 | + | -0.1 | |||
4,538,864 | + | -1.7 | |||
4,538,867 | + | -1.7 | |||
4,538,931 | + | -0.1 | |||
4,538,931 | + | -0.1 | |||
4,538,932 | + | -0.1 | |||
4,538,936 | + | -0.1 | |||
4,538,936 | + | -0.1 | |||
4,538,936 | + | -0.1 | |||
4,538,936 | + | -1.1 | |||
4,538,941 | + | -0.1 | |||
4,538,944 | + | -0.1 | |||
4,538,944 | + | -0.1 | |||
4,538,944 | + | -0.1 | |||
4,538,946 | + | +1.5 | |||
4,538,946 | + | -0.1 | |||
4,538,946 | + | -1.1 | |||
4,538,946 | + | -1.1 | |||
4,539,012 | + | -0.1 | |||
4,539,012 | + | -0.1 | |||
4,539,012 | + | -0.1 | |||
4,539,013 | + | -0.1 | |||
4,539,013 | + | -0.1 | |||
4,539,014 | + | -0.1 | |||
4,539,047 | + | fimB | b4312 | 0.11 | -0.1 |
4,539,047 | + | fimB | b4312 | 0.11 | -0.1 |
4,539,171 | + | fimB | b4312 | 0.32 | -0.1 |
4,539,171 | + | fimB | b4312 | 0.32 | -0.1 |
4,539,209 | + | fimB | b4312 | 0.38 | -0.1 |
4,539,248 | - | fimB | b4312 | 0.44 | -0.1 |
4,539,260 | + | fimB | b4312 | 0.46 | -0.1 |
4,539,260 | + | fimB | b4312 | 0.46 | -0.1 |
4,539,263 | + | fimB | b4312 | 0.47 | -0.1 |
4,539,263 | + | fimB | b4312 | 0.47 | -0.1 |
4,539,263 | + | fimB | b4312 | 0.47 | -0.1 |
4,539,263 | + | fimB | b4312 | 0.47 | -0.1 |
4,539,269 | + | fimB | b4312 | 0.48 | -0.1 |
4,539,269 | - | fimB | b4312 | 0.48 | -0.1 |
4,539,270 | + | fimB | b4312 | 0.48 | -1.7 |
4,539,271 | + | fimB | b4312 | 0.48 | -0.1 |
4,539,271 | - | fimB | b4312 | 0.48 | -0.1 |
4,539,277 | - | fimB | b4312 | 0.49 | -0.1 |
4,539,277 | - | fimB | b4312 | 0.49 | -0.1 |
4,539,278 | + | fimB | b4312 | 0.49 | -0.1 |
4,539,280 | + | fimB | b4312 | 0.50 | -0.1 |
4,539,282 | + | fimB | b4312 | 0.50 | -0.1 |
4,539,282 | + | fimB | b4312 | 0.50 | -0.1 |
4,539,282 | + | fimB | b4312 | 0.50 | -0.1 |
4,539,282 | + | fimB | b4312 | 0.50 | -0.1 |
4,539,282 | + | fimB | b4312 | 0.50 | +0.6 |
4,539,282 | + | fimB | b4312 | 0.50 | +0.9 |
4,539,286 | - | fimB | b4312 | 0.51 | -0.1 |
4,539,290 | - | fimB | b4312 | 0.51 | -1.7 |
4,539,326 | - | fimB | b4312 | 0.57 | +0.7 |
4,539,339 | + | fimB | b4312 | 0.60 | -0.1 |
4,539,367 | + | fimB | b4312 | 0.64 | -2.1 |
4,539,370 | + | fimB | b4312 | 0.65 | -0.7 |
4,539,371 | + | fimB | b4312 | 0.65 | +0.9 |
4,539,371 | + | fimB | b4312 | 0.65 | +0.4 |
4,539,371 | + | fimB | b4312 | 0.65 | +0.1 |
4,539,371 | + | fimB | b4312 | 0.65 | -2.1 |
4,539,372 | + | fimB | b4312 | 0.65 | +0.5 |
4,539,373 | + | fimB | b4312 | 0.65 | +0.4 |
4,539,382 | + | fimB | b4312 | 0.67 | -0.1 |
4,539,382 | + | fimB | b4312 | 0.67 | -1.7 |
4,539,403 | + | fimB | b4312 | 0.70 | -0.1 |
4,539,403 | + | fimB | b4312 | 0.70 | -0.5 |
4,539,403 | + | fimB | b4312 | 0.70 | +0.6 |
4,539,414 | + | fimB | b4312 | 0.72 | -0.1 |
4,539,414 | + | fimB | b4312 | 0.72 | +0.5 |
4,539,416 | + | fimB | b4312 | 0.72 | +1.2 |
4,539,438 | + | fimB | b4312 | 0.76 | -1.1 |
4,539,445 | + | fimB | b4312 | 0.77 | -0.2 |
4,539,445 | + | fimB | b4312 | 0.77 | -0.8 |
4,539,460 | + | fimB | b4312 | 0.80 | -1.1 |
4,539,460 | + | fimB | b4312 | 0.80 | +0.7 |
4,539,460 | + | fimB | b4312 | 0.80 | +1.3 |
4,539,478 | - | fimB | b4312 | 0.83 | -0.1 |
4,539,497 | + | fimB | b4312 | 0.86 | +0.8 |
4,539,498 | - | fimB | b4312 | 0.86 | -0.1 |
4,539,498 | - | fimB | b4312 | 0.86 | -0.1 |
4,539,499 | + | fimB | b4312 | 0.86 | -0.1 |
4,539,499 | + | fimB | b4312 | 0.86 | -1.1 |
4,539,499 | + | fimB | b4312 | 0.86 | -0.1 |
4,539,499 | + | fimB | b4312 | 0.86 | -0.1 |
4,539,499 | + | fimB | b4312 | 0.86 | -0.5 |
4,539,501 | + | fimB | b4312 | 0.86 | +0.2 |
4,539,501 | + | fimB | b4312 | 0.86 | -2.2 |
4,539,501 | + | fimB | b4312 | 0.86 | +2.4 |
4,539,501 | + | fimB | b4312 | 0.86 | -1.3 |
4,539,504 | + | fimB | b4312 | 0.87 | +0.6 |
4,539,504 | + | fimB | b4312 | 0.87 | +1.3 |
4,539,505 | - | fimB | b4312 | 0.87 | -0.1 |
4,539,508 | + | fimB | b4312 | 0.88 | -0.7 |
4,539,509 | - | fimB | b4312 | 0.88 | -0.1 |
4,539,509 | - | fimB | b4312 | 0.88 | -0.1 |
4,539,512 | - | fimB | b4312 | 0.88 | -0.1 |
4,539,513 | + | fimB | b4312 | 0.88 | +1.0 |
4,539,513 | + | fimB | b4312 | 0.88 | +0.7 |
4,539,538 | + | +1.1 | |||
4,539,538 | + | -1.8 | |||
4,539,538 | + | +0.7 | |||
4,539,542 | + | -1.4 | |||
4,539,543 | + | -1.1 | |||
4,539,543 | + | +0.1 | |||
4,539,543 | + | +0.6 | |||
4,539,543 | + | -0.6 | |||
4,539,546 | - | -0.1 | |||
4,539,546 | - | -0.1 | |||
4,539,548 | + | -0.1 | |||
4,539,548 | + | +0.3 | |||
4,539,548 | + | -0.1 | |||
4,539,548 | + | +0.8 | |||
4,539,548 | + | -0.1 | |||
4,539,548 | + | -1.1 | |||
4,539,548 | + | +0.7 | |||
4,539,548 | + | -0.7 | |||
4,539,549 | + | +1.3 | |||
4,539,552 | + | +0.3 | |||
4,539,554 | + | -0.1 | |||
4,539,554 | + | -0.8 | |||
4,539,554 | + | +0.3 | |||
4,539,554 | + | +1.7 | |||
4,539,554 | + | -0.8 | |||
4,539,554 | + | +0.9 | |||
4,539,557 | + | +0.5 | |||
4,539,564 | + | +0.8 | |||
4,539,574 | + | -0.1 | |||
4,539,574 | + | +0.1 | |||
4,539,574 | + | +0.1 | |||
4,539,576 | + | +1.0 | |||
4,539,578 | + | -0.3 | |||
4,539,586 | + | -0.1 | |||
4,539,588 | + | -0.1 | |||
4,539,588 | + | -1.7 | |||
4,539,588 | + | +0.1 | |||
4,539,588 | + | -2.2 | |||
4,539,595 | + | +0.9 | |||
4,539,858 | + | -1.1 | |||
4,539,950 | - | -0.1 | |||
4,539,955 | - | -1.1 | |||
4,539,955 | - | -1.1 | |||
4,539,970 | - | -1.1 | |||
4,540,054 | - | -0.2 | |||
4,540,057 | - | +0.9 | |||
4,540,057 | - | -0.7 | |||
4,540,057 | - | +1.7 | |||
4,540,060 | - | -0.3 | |||
4,540,060 | - | -1.7 | |||
4,540,060 | - | -1.3 | |||
4,540,060 | - | +0.1 | |||
4,540,079 | - | -0.7 | |||
4,540,079 | - | -0.1 | |||
4,540,085 | + | -1.1 | |||
4,540,093 | + | -0.1 | |||
4,540,093 | - | -1.1 | |||
4,540,093 | - | -0.7 | |||
4,540,093 | - | +0.9 | |||
4,540,101 | - | -0.1 | |||
4,540,101 | - | -1.1 | |||
4,540,101 | - | +0.9 | |||
4,540,101 | - | -0.7 | |||
4,540,106 | - | -0.8 | |||
4,540,110 | - | -1.1 | |||
4,540,110 | - | -0.1 | |||
4,540,112 | - | -0.5 | |||
4,540,114 | + | -0.1 | |||
4,540,114 | + | -1.7 | |||
4,540,116 | + | -1.1 | |||
4,540,116 | + | +1.5 | |||
4,540,116 | + | -0.1 | |||
4,540,122 | - | fimE | b4313 | 0.10 | -0.9 |
4,540,122 | - | fimE | b4313 | 0.10 | -0.1 |
4,540,122 | - | fimE | b4313 | 0.10 | -1.1 |
4,540,124 | - | fimE | b4313 | 0.11 | -1.4 |
4,540,169 | + | fimE | b4313 | 0.18 | -0.1 |
4,540,175 | + | fimE | b4313 | 0.19 | -1.1 |
4,540,179 | + | fimE | b4313 | 0.20 | -0.1 |
4,540,179 | + | fimE | b4313 | 0.20 | -1.1 |
4,540,181 | + | fimE | b4313 | 0.20 | -0.1 |
4,540,181 | + | fimE | b4313 | 0.20 | +1.9 |
4,540,181 | + | fimE | b4313 | 0.20 | -1.9 |
4,540,183 | - | fimE | b4313 | 0.21 | -0.1 |
4,540,184 | + | fimE | b4313 | 0.21 | -0.3 |
4,540,192 | + | fimE | b4313 | 0.22 | -0.1 |
4,540,192 | - | fimE | b4313 | 0.22 | -0.4 |
4,540,192 | - | fimE | b4313 | 0.22 | -1.1 |
4,540,192 | - | fimE | b4313 | 0.22 | -0.8 |
4,540,192 | - | fimE | b4313 | 0.22 | -2.1 |
4,540,215 | - | fimE | b4313 | 0.26 | -2.1 |
4,540,215 | - | fimE | b4313 | 0.26 | -1.1 |
4,540,215 | - | fimE | b4313 | 0.26 | -0.1 |
4,540,279 | - | fimE | b4313 | 0.37 | -1.3 |
4,540,279 | - | fimE | b4313 | 0.37 | -0.9 |
4,540,279 | - | fimE | b4313 | 0.37 | -0.9 |
4,540,294 | - | fimE | b4313 | 0.39 | -2.1 |
4,540,294 | - | fimE | b4313 | 0.39 | -2.4 |
4,540,294 | - | fimE | b4313 | 0.39 | +0.2 |
4,540,296 | + | fimE | b4313 | 0.40 | +1.5 |
4,540,296 | + | fimE | b4313 | 0.40 | -0.1 |
4,540,296 | + | fimE | b4313 | 0.40 | -0.1 |
4,540,296 | + | fimE | b4313 | 0.40 | -1.1 |
4,540,296 | + | fimE | b4313 | 0.40 | -0.1 |
4,540,304 | - | fimE | b4313 | 0.41 | -0.4 |
4,540,304 | - | fimE | b4313 | 0.41 | -0.3 |
4,540,304 | - | fimE | b4313 | 0.41 | -2.2 |
4,540,304 | - | fimE | b4313 | 0.41 | -1.1 |
4,540,306 | - | fimE | b4313 | 0.41 | -3.1 |
4,540,311 | + | fimE | b4313 | 0.42 | -0.1 |
4,540,318 | + | fimE | b4313 | 0.43 | +1.5 |
4,540,318 | + | fimE | b4313 | 0.43 | -0.4 |
4,540,318 | + | fimE | b4313 | 0.43 | -2.4 |
4,540,318 | + | fimE | b4313 | 0.43 | -0.1 |
4,540,318 | + | fimE | b4313 | 0.43 | -1.1 |
4,540,319 | + | fimE | b4313 | 0.43 | -1.1 |
4,540,326 | - | fimE | b4313 | 0.45 | -1.9 |
4,540,326 | - | fimE | b4313 | 0.45 | -0.6 |
4,540,326 | - | fimE | b4313 | 0.45 | +0.9 |
4,540,326 | - | fimE | b4313 | 0.45 | -1.1 |
4,540,326 | - | fimE | b4313 | 0.45 | -1.0 |
4,540,342 | + | fimE | b4313 | 0.47 | +0.3 |
4,540,342 | + | fimE | b4313 | 0.47 | +0.9 |
4,540,343 | + | fimE | b4313 | 0.47 | -1.7 |
4,540,361 | - | fimE | b4313 | 0.50 | +0.5 |
4,540,361 | - | fimE | b4313 | 0.50 | -1.1 |
4,540,397 | - | fimE | b4313 | 0.56 | -1.4 |
4,540,407 | - | fimE | b4313 | 0.58 | -2.4 |
4,540,412 | - | fimE | b4313 | 0.59 | -0.4 |
4,540,413 | + | fimE | b4313 | 0.59 | -1.1 |
4,540,430 | + | fimE | b4313 | 0.62 | -0.1 |
4,540,430 | + | fimE | b4313 | 0.62 | -1.1 |
4,540,440 | - | fimE | b4313 | 0.64 | -0.1 |
4,540,440 | - | fimE | b4313 | 0.64 | +0.5 |
4,540,450 | + | fimE | b4313 | 0.65 | -1.1 |
4,540,450 | + | fimE | b4313 | 0.65 | +1.9 |
4,540,450 | + | fimE | b4313 | 0.65 | -0.7 |
4,540,455 | + | fimE | b4313 | 0.66 | -2.4 |
4,540,455 | + | fimE | b4313 | 0.66 | -0.8 |
4,540,458 | - | fimE | b4313 | 0.67 | -2.9 |
4,540,458 | - | fimE | b4313 | 0.67 | +0.7 |
4,540,458 | - | fimE | b4313 | 0.67 | -1.3 |
4,540,461 | + | fimE | b4313 | 0.67 | -2.1 |
4,540,463 | + | fimE | b4313 | 0.68 | -2.4 |
4,540,465 | + | fimE | b4313 | 0.68 | -0.1 |
4,540,465 | + | fimE | b4313 | 0.68 | +0.7 |
4,540,465 | + | fimE | b4313 | 0.68 | +1.9 |
4,540,465 | + | fimE | b4313 | 0.68 | -1.1 |
4,540,469 | - | fimE | b4313 | 0.69 | -1.1 |
4,540,469 | - | fimE | b4313 | 0.69 | -2.9 |
4,540,470 | - | fimE | b4313 | 0.69 | -1.1 |
4,540,470 | - | fimE | b4313 | 0.69 | -1.1 |
4,540,470 | - | fimE | b4313 | 0.69 | -1.5 |
4,540,471 | - | fimE | b4313 | 0.69 | -0.1 |
4,540,471 | - | fimE | b4313 | 0.69 | -1.1 |
4,540,471 | - | fimE | b4313 | 0.69 | -2.4 |
4,540,471 | - | fimE | b4313 | 0.69 | -1.9 |
4,540,479 | + | fimE | b4313 | 0.70 | +0.5 |
4,540,482 | - | fimE | b4313 | 0.71 | -2.7 |
4,540,483 | - | fimE | b4313 | 0.71 | -1.7 |
4,540,487 | + | fimE | b4313 | 0.72 | -0.1 |
4,540,487 | + | fimE | b4313 | 0.72 | -0.1 |
4,540,495 | - | fimE | b4313 | 0.73 | -0.1 |
4,540,508 | + | fimE | b4313 | 0.75 | -0.1 |
4,540,513 | + | fimE | b4313 | 0.76 | -0.1 |
4,540,549 | - | fimE | b4313 | 0.82 | -0.4 |
4,540,562 | - | fimE | b4313 | 0.84 | -2.2 |
4,540,572 | - | fimE | b4313 | 0.86 | -0.1 |
4,540,574 | - | fimE | b4313 | 0.86 | +0.9 |
4,540,574 | - | fimE | b4313 | 0.86 | -0.4 |
4,540,578 | + | fimE | b4313 | 0.87 | -0.1 |
Or see this region's nucleotide sequence