Experiment: Atjh2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3323 and Atu3324 are separated by 83 nucleotides Atu3324 and Atu3325 overlap by 4 nucleotides
Atu3323: Atu3323 - HlyD family secretion protein, at 356,437 to 357,795
Atu3323
Atu3324: Atu3324 - hypothetical protein, at 357,879 to 358,373
Atu3324
Atu3325: Atu3325 - exopolysaccharide production protein, at 358,370 to 359,638
Atu3325
Position (kb) 357
358
359 Strain fitness (log2 ratio) -1
0
1
2 at 356.976 kb on + strand, within Atu3323 at 357.106 kb on + strand, within Atu3323 at 357.155 kb on - strand, within Atu3323 at 357.322 kb on + strand, within Atu3323 at 357.374 kb on + strand, within Atu3323 at 357.380 kb on + strand, within Atu3323 at 357.498 kb on + strand, within Atu3323 at 357.613 kb on - strand, within Atu3323 at 357.620 kb on - strand, within Atu3323 at 357.621 kb on + strand, within Atu3323 at 357.631 kb on - strand, within Atu3323 at 357.719 kb on - strand at 357.808 kb on + strand at 357.816 kb on - strand at 357.850 kb on + strand at 357.897 kb on - strand at 357.932 kb on + strand, within Atu3324 at 358.075 kb on - strand, within Atu3324 at 358.096 kb on - strand, within Atu3324 at 358.200 kb on + strand, within Atu3324 at 358.220 kb on + strand, within Atu3324 at 358.263 kb on - strand, within Atu3324 at 358.321 kb on - strand, within Atu3324 at 358.421 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atjh2 remove 356,976 + Atu3323 0.40 +1.1 357,106 + Atu3323 0.49 -0.3 357,155 - Atu3323 0.53 +1.1 357,322 + Atu3323 0.65 -0.5 357,374 + Atu3323 0.69 +0.5 357,380 + Atu3323 0.69 -0.0 357,498 + Atu3323 0.78 -0.5 357,613 - Atu3323 0.87 -0.6 357,620 - Atu3323 0.87 +1.0 357,621 + Atu3323 0.87 -0.2 357,631 - Atu3323 0.88 +1.7 357,719 - -0.2 357,808 + +0.4 357,816 - -0.5 357,850 + +0.7 357,897 - -0.3 357,932 + Atu3324 0.11 +0.2 358,075 - Atu3324 0.40 -0.1 358,096 - Atu3324 0.44 +1.5 358,200 + Atu3324 0.65 +0.8 358,220 + Atu3324 0.69 +2.7 358,263 - Atu3324 0.78 +0.9 358,321 - Atu3324 0.89 -0.6 358,421 - -1.7
Or see this region's nucleotide sequence