Experiment: Atjh15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3153 and Atu3154 are separated by 125 nucleotides Atu3154 and Atu3155 are separated by 83 nucleotides
Atu3153: Atu3153 - AraC family transcriptional regulator, at 161,886 to 162,740
Atu3153
Atu3154: Atu3154 - fosmidomycin resistance protein, at 162,866 to 164,062
Atu3154
Atu3155: Atu3155 - LysR family transcriptional regulator, at 164,146 to 165,042
Atu3155
Position (kb) 162
163
164
165 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 161.867 kb on + strand at 161.892 kb on - strand at 161.899 kb on - strand at 161.953 kb on - strand at 162.076 kb on + strand, within Atu3153 at 162.084 kb on - strand, within Atu3153 at 162.212 kb on + strand, within Atu3153 at 162.242 kb on - strand, within Atu3153 at 162.481 kb on - strand, within Atu3153 at 162.496 kb on + strand, within Atu3153 at 162.515 kb on - strand, within Atu3153 at 162.521 kb on + strand, within Atu3153 at 162.533 kb on - strand, within Atu3153 at 162.549 kb on + strand, within Atu3153 at 162.557 kb on - strand, within Atu3153 at 162.598 kb on - strand, within Atu3153 at 162.620 kb on - strand, within Atu3153 at 162.630 kb on - strand, within Atu3153 at 162.642 kb on - strand, within Atu3153 at 162.689 kb on + strand at 162.694 kb on - strand at 163.022 kb on - strand, within Atu3154 at 163.084 kb on - strand, within Atu3154 at 163.106 kb on + strand, within Atu3154 at 163.143 kb on - strand, within Atu3154 at 163.158 kb on + strand, within Atu3154 at 163.169 kb on + strand, within Atu3154 at 163.197 kb on + strand, within Atu3154 at 163.280 kb on + strand, within Atu3154 at 163.339 kb on + strand, within Atu3154 at 163.371 kb on + strand, within Atu3154 at 163.423 kb on + strand, within Atu3154 at 163.431 kb on - strand, within Atu3154 at 163.431 kb on - strand, within Atu3154 at 163.446 kb on + strand, within Atu3154 at 163.514 kb on + strand, within Atu3154 at 163.514 kb on + strand, within Atu3154 at 163.514 kb on + strand, within Atu3154 at 163.549 kb on - strand, within Atu3154 at 163.595 kb on - strand, within Atu3154 at 163.726 kb on - strand, within Atu3154 at 163.794 kb on - strand, within Atu3154 at 163.961 kb on - strand at 164.066 kb on - strand at 164.107 kb on + strand at 164.127 kb on + strand at 164.132 kb on + strand at 164.145 kb on - strand at 164.204 kb on + strand at 164.243 kb on - strand, within Atu3155 at 164.320 kb on - strand, within Atu3155 at 164.348 kb on - strand, within Atu3155 at 164.569 kb on - strand, within Atu3155 at 164.611 kb on + strand, within Atu3155 at 164.746 kb on + strand, within Atu3155 at 164.867 kb on + strand, within Atu3155 at 164.882 kb on + strand, within Atu3155 at 164.962 kb on - strand at 165.037 kb on + strand at 165.058 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atjh15 remove 161,867 + -1.4 161,892 - +0.7 161,899 - +1.1 161,953 - +0.5 162,076 + Atu3153 0.22 +0.7 162,084 - Atu3153 0.23 +0.9 162,212 + Atu3153 0.38 -0.3 162,242 - Atu3153 0.42 -1.5 162,481 - Atu3153 0.70 +0.8 162,496 + Atu3153 0.71 +3.0 162,515 - Atu3153 0.74 -0.2 162,521 + Atu3153 0.74 +0.7 162,533 - Atu3153 0.76 -0.2 162,549 + Atu3153 0.78 +1.2 162,557 - Atu3153 0.78 -0.5 162,598 - Atu3153 0.83 +0.7 162,620 - Atu3153 0.86 -0.0 162,630 - Atu3153 0.87 +1.4 162,642 - Atu3153 0.88 +0.8 162,689 + +0.3 162,694 - +0.6 163,022 - Atu3154 0.13 -0.8 163,084 - Atu3154 0.18 +2.7 163,106 + Atu3154 0.20 -1.6 163,143 - Atu3154 0.23 -1.2 163,158 + Atu3154 0.24 +2.0 163,169 + Atu3154 0.25 +1.4 163,197 + Atu3154 0.28 -0.2 163,280 + Atu3154 0.35 +0.2 163,339 + Atu3154 0.40 +1.0 163,371 + Atu3154 0.42 -0.2 163,423 + Atu3154 0.47 +2.0 163,431 - Atu3154 0.47 +2.5 163,431 - Atu3154 0.47 +2.1 163,446 + Atu3154 0.48 +0.1 163,514 + Atu3154 0.54 +0.5 163,514 + Atu3154 0.54 +0.3 163,514 + Atu3154 0.54 +1.1 163,549 - Atu3154 0.57 -0.4 163,595 - Atu3154 0.61 +0.5 163,726 - Atu3154 0.72 -0.8 163,794 - Atu3154 0.78 +0.8 163,961 - -0.2 164,066 - +0.4 164,107 + -0.9 164,127 + -0.4 164,132 + +1.5 164,145 - -2.0 164,204 + +0.6 164,243 - Atu3155 0.11 +0.7 164,320 - Atu3155 0.19 -0.0 164,348 - Atu3155 0.23 +1.6 164,569 - Atu3155 0.47 -0.3 164,611 + Atu3155 0.52 -0.3 164,746 + Atu3155 0.67 +1.2 164,867 + Atu3155 0.80 -0.7 164,882 + Atu3155 0.82 -0.7 164,962 - -0.5 165,037 + -0.4 165,058 + -1.1
Or see this region's nucleotide sequence