Strain Fitness in Escherichia coli BW25113 around b4255

Experiment: 1/10ON soft

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargI and yjgD are separated by 161 nucleotidesyjgD and yjgM are separated by 144 nucleotidesyjgM and yjgN are separated by 192 nucleotides b4254: argI - ornithine carbamoyltransferase 1 (NCBI), at 4,475,330 to 4,476,334 argI b4255: yjgD - hypothetical protein (NCBI), at 4,476,496 to 4,476,912 yjgD b4256: yjgM - predicted acetyltransferase (NCBI), at 4,477,057 to 4,477,560 yjgM b4257: yjgN - conserved inner membrane protein (NCBI), at 4,477,753 to 4,478,949 yjgN Position (kb) 4476 4477Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4475.545 kb on - strand, within argIat 4475.567 kb on - strand, within argIat 4475.632 kb on + strand, within argIat 4475.670 kb on - strand, within argIat 4475.716 kb on + strand, within argIat 4475.840 kb on - strand, within argIat 4475.850 kb on + strand, within argIat 4475.850 kb on + strand, within argIat 4475.911 kb on + strand, within argIat 4475.911 kb on + strand, within argIat 4475.963 kb on - strand, within argIat 4476.025 kb on - strand, within argIat 4476.061 kb on + strand, within argIat 4476.061 kb on + strand, within argIat 4476.069 kb on - strand, within argIat 4476.069 kb on - strand, within argIat 4476.104 kb on + strand, within argIat 4476.104 kb on + strand, within argIat 4476.142 kb on + strand, within argIat 4476.165 kb on - strand, within argIat 4476.272 kb on + strandat 4476.272 kb on + strandat 4476.330 kb on + strandat 4476.339 kb on - strandat 4476.442 kb on + strandat 4476.466 kb on - strandat 4476.585 kb on + strand, within yjgDat 4476.588 kb on + strand, within yjgDat 4476.588 kb on + strand, within yjgDat 4476.588 kb on + strand, within yjgDat 4476.663 kb on + strand, within yjgDat 4476.673 kb on - strand, within yjgDat 4476.680 kb on + strand, within yjgDat 4476.680 kb on + strand, within yjgDat 4476.741 kb on - strand, within yjgDat 4476.822 kb on - strand, within yjgDat 4476.930 kb on + strandat 4476.969 kb on + strandat 4477.018 kb on + strandat 4477.042 kb on - strandat 4477.072 kb on + strandat 4477.072 kb on + strandat 4477.090 kb on - strandat 4477.090 kb on - strandat 4477.108 kb on - strand, within yjgMat 4477.108 kb on - strand, within yjgMat 4477.119 kb on + strand, within yjgMat 4477.119 kb on + strand, within yjgMat 4477.130 kb on + strand, within yjgMat 4477.130 kb on + strand, within yjgMat 4477.184 kb on + strand, within yjgMat 4477.192 kb on + strand, within yjgMat 4477.202 kb on + strand, within yjgMat 4477.202 kb on - strand, within yjgMat 4477.213 kb on + strand, within yjgMat 4477.213 kb on - strand, within yjgMat 4477.219 kb on + strand, within yjgMat 4477.310 kb on - strand, within yjgMat 4477.319 kb on + strand, within yjgMat 4477.331 kb on + strand, within yjgMat 4477.339 kb on - strand, within yjgMat 4477.339 kb on - strand, within yjgMat 4477.340 kb on + strand, within yjgMat 4477.348 kb on - strand, within yjgMat 4477.350 kb on + strand, within yjgMat 4477.358 kb on - strand, within yjgMat 4477.358 kb on - strand, within yjgMat 4477.358 kb on - strand, within yjgMat 4477.358 kb on - strand, within yjgMat 4477.363 kb on - strand, within yjgMat 4477.367 kb on - strand, within yjgMat 4477.374 kb on + strand, within yjgMat 4477.378 kb on - strand, within yjgMat 4477.379 kb on - strand, within yjgMat 4477.385 kb on - strand, within yjgMat 4477.400 kb on + strand, within yjgMat 4477.406 kb on - strand, within yjgMat 4477.406 kb on - strand, within yjgMat 4477.408 kb on - strand, within yjgMat 4477.413 kb on + strand, within yjgMat 4477.428 kb on + strand, within yjgMat 4477.428 kb on + strand, within yjgMat 4477.436 kb on + strand, within yjgMat 4477.436 kb on + strand, within yjgMat 4477.441 kb on + strand, within yjgMat 4477.444 kb on - strand, within yjgMat 4477.444 kb on - strand, within yjgMat 4477.444 kb on - strand, within yjgMat 4477.444 kb on - strand, within yjgMat 4477.444 kb on - strand, within yjgMat 4477.476 kb on + strand, within yjgMat 4477.492 kb on + strand, within yjgMat 4477.497 kb on + strand, within yjgMat 4477.498 kb on + strand, within yjgMat 4477.500 kb on + strand, within yjgMat 4477.500 kb on + strand, within yjgMat 4477.505 kb on + strand, within yjgMat 4477.518 kb on - strandat 4477.521 kb on + strandat 4477.528 kb on + strandat 4477.530 kb on + strandat 4477.556 kb on + strandat 4477.597 kb on + strandat 4477.612 kb on + strandat 4477.612 kb on + strandat 4477.612 kb on + strandat 4477.612 kb on + strandat 4477.615 kb on - strandat 4477.620 kb on - strandat 4477.658 kb on + strandat 4477.658 kb on + strandat 4477.666 kb on - strandat 4477.673 kb on + strandat 4477.673 kb on + strandat 4477.675 kb on + strandat 4477.677 kb on + strandat 4477.693 kb on + strandat 4477.693 kb on + strandat 4477.707 kb on + strandat 4477.709 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1/10ON soft
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4,475,545 - argI b4254 0.21 -0.3
4,475,567 - argI b4254 0.24 +0.2
4,475,632 + argI b4254 0.30 -0.1
4,475,670 - argI b4254 0.34 -1.3
4,475,716 + argI b4254 0.38 -1.0
4,475,840 - argI b4254 0.51 +0.8
4,475,850 + argI b4254 0.52 -0.3
4,475,850 + argI b4254 0.52 +1.0
4,475,911 + argI b4254 0.58 +0.0
4,475,911 + argI b4254 0.58 +0.2
4,475,963 - argI b4254 0.63 -1.4
4,476,025 - argI b4254 0.69 +0.5
4,476,061 + argI b4254 0.73 -1.1
4,476,061 + argI b4254 0.73 +0.5
4,476,069 - argI b4254 0.74 +1.9
4,476,069 - argI b4254 0.74 +0.9
4,476,104 + argI b4254 0.77 +1.0
4,476,104 + argI b4254 0.77 +0.7
4,476,142 + argI b4254 0.81 +0.7
4,476,165 - argI b4254 0.83 +1.6
4,476,272 + -0.3
4,476,272 + -0.2
4,476,330 + +0.5
4,476,339 - -0.7
4,476,442 + +0.3
4,476,466 - +1.0
4,476,585 + yjgD b4255 0.21 -0.4
4,476,588 + yjgD b4255 0.22 -0.9
4,476,588 + yjgD b4255 0.22 -0.5
4,476,588 + yjgD b4255 0.22 -0.1
4,476,663 + yjgD b4255 0.40 -0.0
4,476,673 - yjgD b4255 0.42 -0.6
4,476,680 + yjgD b4255 0.44 -0.7
4,476,680 + yjgD b4255 0.44 +1.1
4,476,741 - yjgD b4255 0.59 +0.9
4,476,822 - yjgD b4255 0.78 -0.7
4,476,930 + +2.1
4,476,969 + +0.1
4,477,018 + -0.0
4,477,042 - +0.2
4,477,072 + +2.1
4,477,072 + +0.3
4,477,090 - -0.1
4,477,090 - -0.1
4,477,108 - yjgM b4256 0.10 -0.0
4,477,108 - yjgM b4256 0.10 -0.7
4,477,119 + yjgM b4256 0.12 +0.6
4,477,119 + yjgM b4256 0.12 +0.1
4,477,130 + yjgM b4256 0.14 -0.0
4,477,130 + yjgM b4256 0.14 -0.3
4,477,184 + yjgM b4256 0.25 +0.2
4,477,192 + yjgM b4256 0.27 -1.0
4,477,202 + yjgM b4256 0.29 +0.6
4,477,202 - yjgM b4256 0.29 -0.3
4,477,213 + yjgM b4256 0.31 -2.6
4,477,213 - yjgM b4256 0.31 -0.5
4,477,219 + yjgM b4256 0.32 +0.6
4,477,310 - yjgM b4256 0.50 -1.1
4,477,319 + yjgM b4256 0.52 +1.7
4,477,331 + yjgM b4256 0.54 -0.4
4,477,339 - yjgM b4256 0.56 -0.1
4,477,339 - yjgM b4256 0.56 -0.0
4,477,340 + yjgM b4256 0.56 +1.2
4,477,348 - yjgM b4256 0.58 -1.8
4,477,350 + yjgM b4256 0.58 -0.3
4,477,358 - yjgM b4256 0.60 +0.6
4,477,358 - yjgM b4256 0.60 +0.3
4,477,358 - yjgM b4256 0.60 +0.8
4,477,358 - yjgM b4256 0.60 +0.2
4,477,363 - yjgM b4256 0.61 -0.6
4,477,367 - yjgM b4256 0.62 -1.0
4,477,374 + yjgM b4256 0.63 +0.9
4,477,378 - yjgM b4256 0.64 +0.9
4,477,379 - yjgM b4256 0.64 -0.5
4,477,385 - yjgM b4256 0.65 +0.3
4,477,400 + yjgM b4256 0.68 +0.9
4,477,406 - yjgM b4256 0.69 +0.0
4,477,406 - yjgM b4256 0.69 +0.2
4,477,408 - yjgM b4256 0.70 -0.2
4,477,413 + yjgM b4256 0.71 +0.7
4,477,428 + yjgM b4256 0.74 -0.8
4,477,428 + yjgM b4256 0.74 +0.0
4,477,436 + yjgM b4256 0.75 -2.3
4,477,436 + yjgM b4256 0.75 +1.1
4,477,441 + yjgM b4256 0.76 -1.5
4,477,444 - yjgM b4256 0.77 +0.1
4,477,444 - yjgM b4256 0.77 -1.7
4,477,444 - yjgM b4256 0.77 +0.2
4,477,444 - yjgM b4256 0.77 -0.1
4,477,444 - yjgM b4256 0.77 -0.4
4,477,476 + yjgM b4256 0.83 -3.1
4,477,492 + yjgM b4256 0.86 -0.5
4,477,497 + yjgM b4256 0.87 -0.2
4,477,498 + yjgM b4256 0.88 +0.2
4,477,500 + yjgM b4256 0.88 -0.3
4,477,500 + yjgM b4256 0.88 +0.7
4,477,505 + yjgM b4256 0.89 +2.1
4,477,518 - +0.4
4,477,521 + -1.3
4,477,528 + -0.8
4,477,530 + +0.9
4,477,556 + -0.1
4,477,597 + +1.3
4,477,612 + -0.8
4,477,612 + -1.3
4,477,612 + -1.8
4,477,612 + -0.8
4,477,615 - -1.0
4,477,620 - -1.8
4,477,658 + -1.3
4,477,658 + -2.3
4,477,666 - -0.3
4,477,673 + +0.5
4,477,673 + -0.3
4,477,675 + -0.3
4,477,677 + -0.8
4,477,693 + -1.3
4,477,693 + -0.3
4,477,707 + -0.3
4,477,709 + -0.3

Or see this region's nucleotide sequence