Strain Fitness in Escherichia coli BW25113 around b3180

Experiment: 1/10ON soft

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsH and rlmE are separated by 99 nucleotidesrlmE and yhbY are separated by 125 nucleotidesyhbY and greA are separated by 155 nucleotidesgreA and dacB are separated by 247 nucleotides b3178: ftsH - protease, ATP-dependent zinc-metallo (NCBI), at 3,323,023 to 3,324,957 ftsH b3179: rlmE - 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent (NCBI), at 3,325,057 to 3,325,686 rlmE b3180: yhbY - predicted RNA-binding protein (NCBI), at 3,325,812 to 3,326,105 yhbY b3181: greA - transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS), at 3,326,261 to 3,326,737 greA b3182: dacB - D-alanyl-D-alanine carboxypeptidase (NCBI), at 3,326,985 to 3,328,418 dacB Position (kb) 3325 3326 3327Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3324.988 kb on - strandat 3324.988 kb on - strandat 3325.020 kb on - strandat 3325.021 kb on - strandat 3325.022 kb on - strandat 3325.025 kb on - strandat 3325.061 kb on + strandat 3325.061 kb on + strandat 3325.064 kb on - strandat 3325.064 kb on - strandat 3325.085 kb on - strandat 3325.085 kb on - strandat 3325.749 kb on - strandat 3325.849 kb on + strand, within yhbYat 3325.849 kb on + strandat 3325.883 kb on - strand, within yhbYat 3325.908 kb on - strand, within yhbYat 3325.913 kb on + strand, within yhbYat 3325.921 kb on - strand, within yhbYat 3325.928 kb on + strand, within yhbYat 3325.932 kb on + strand, within yhbYat 3325.939 kb on + strandat 3325.940 kb on - strand, within yhbYat 3325.940 kb on - strand, within yhbYat 3325.976 kb on - strand, within yhbYat 3326.010 kb on - strand, within yhbYat 3326.015 kb on - strand, within yhbYat 3326.015 kb on - strand, within yhbYat 3326.066 kb on - strand, within yhbYat 3326.187 kb on - strandat 3326.190 kb on - strandat 3326.197 kb on + strandat 3326.267 kb on - strandat 3326.278 kb on - strandat 3326.278 kb on - strandat 3326.323 kb on + strand, within greAat 3326.338 kb on - strand, within greAat 3326.500 kb on - strand, within greAat 3326.500 kb on - strand, within greAat 3326.548 kb on + strand, within greAat 3326.548 kb on + strand, within greAat 3326.552 kb on + strand, within greAat 3326.552 kb on + strand, within greAat 3326.602 kb on - strand, within greAat 3326.653 kb on + strand, within greAat 3326.711 kb on + strandat 3326.711 kb on + strandat 3326.719 kb on - strandat 3326.719 kb on - strandat 3326.730 kb on - strandat 3326.738 kb on + strandat 3326.746 kb on - strandat 3326.746 kb on - strandat 3326.772 kb on + strandat 3326.788 kb on + strandat 3326.810 kb on + strandat 3326.810 kb on + strandat 3326.867 kb on + strandat 3326.875 kb on - strandat 3326.899 kb on - strandat 3326.901 kb on + strandat 3326.943 kb on + strandat 3326.980 kb on + strandat 3327.019 kb on + strandat 3327.027 kb on - strandat 3327.030 kb on - strandat 3327.034 kb on + strandat 3327.059 kb on + strandat 3327.064 kb on + strandat 3327.066 kb on + strandat 3327.069 kb on - strandat 3327.088 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1/10ON soft
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3,324,988 - -1.0
3,324,988 - -0.0
3,325,020 - +3.0
3,325,021 - -0.2
3,325,022 - +0.3
3,325,025 - +0.1
3,325,061 + -0.2
3,325,061 + -1.2
3,325,064 - +0.5
3,325,064 - +1.2
3,325,085 - -1.2
3,325,085 - -2.5
3,325,749 - -0.7
3,325,849 + yhbY b3180 0.13 +0.4
3,325,849 + -1.2
3,325,883 - yhbY b3180 0.24 +0.1
3,325,908 - yhbY b3180 0.33 +0.8
3,325,913 + yhbY b3180 0.34 +0.3
3,325,921 - yhbY b3180 0.37 -0.3
3,325,928 + yhbY b3180 0.39 -0.6
3,325,932 + yhbY b3180 0.41 -0.2
3,325,939 + -0.2
3,325,940 - yhbY b3180 0.44 -0.2
3,325,940 - yhbY b3180 0.44 -0.2
3,325,976 - yhbY b3180 0.56 -1.0
3,326,010 - yhbY b3180 0.67 -0.2
3,326,015 - yhbY b3180 0.69 -0.3
3,326,015 - yhbY b3180 0.69 +0.2
3,326,066 - yhbY b3180 0.86 +0.1
3,326,187 - -1.0
3,326,190 - +0.8
3,326,197 + -0.2
3,326,267 - +0.3
3,326,278 - -0.4
3,326,278 - +0.9
3,326,323 + greA b3181 0.13 +0.9
3,326,338 - greA b3181 0.16 -0.0
3,326,500 - greA b3181 0.50 +1.0
3,326,500 - greA b3181 0.50 -0.2
3,326,548 + greA b3181 0.60 -0.4
3,326,548 + greA b3181 0.60 -0.2
3,326,552 + greA b3181 0.61 +0.0
3,326,552 + greA b3181 0.61 +0.5
3,326,602 - greA b3181 0.71 +0.3
3,326,653 + greA b3181 0.82 -0.4
3,326,711 + +1.0
3,326,711 + +0.5
3,326,719 - -1.0
3,326,719 - +0.6
3,326,730 - -0.2
3,326,738 + -0.9
3,326,746 - +0.2
3,326,746 - +0.1
3,326,772 + +1.1
3,326,788 + +1.4
3,326,810 + -0.7
3,326,810 + +1.0
3,326,867 + +0.3
3,326,875 - -0.8
3,326,899 - -0.3
3,326,901 + +0.5
3,326,943 + +0.2
3,326,980 + +0.5
3,327,019 + +0.2
3,327,027 - -0.8
3,327,030 - -0.1
3,327,034 + -0.0
3,327,059 + +0.7
3,327,064 + -0.0
3,327,066 + +0.4
3,327,069 - -0.1
3,327,088 + -0.5

Or see this region's nucleotide sequence