Experiment: 1/10ON soft
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ygdQ and ygdR are separated by 137 nucleotides ygdR and tas are separated by 107 nucleotides tas and ygeD are separated by 31 nucleotides
b2832: ygdQ - predicted inner membrane protein (NCBI), at 2,968,442 to 2,969,155
ygdQ
b2833: ygdR - hypothetical protein (NCBI), at 2,969,293 to 2,969,511
ygdR
b2834: tas - predicted oxidoreductase, NADP(H)-dependent aldo-keto reductase (NCBI), at 2,969,619 to 2,970,659
tas
b2835: ygeD - predicted inner membrane protein (NCBI), at 2,970,691 to 2,971,884
ygeD
Position (kb)
2969
2970
2971 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2968.620 kb on - strand, within ygdQ at 2968.620 kb on - strand, within ygdQ at 2968.648 kb on + strand, within ygdQ at 2968.648 kb on + strand, within ygdQ at 2968.674 kb on + strand, within ygdQ at 2968.786 kb on - strand, within ygdQ at 2968.829 kb on + strand, within ygdQ at 2968.856 kb on - strand, within ygdQ at 2968.880 kb on + strand, within ygdQ at 2968.942 kb on + strand, within ygdQ at 2968.942 kb on + strand, within ygdQ at 2968.955 kb on - strand, within ygdQ at 2969.039 kb on - strand, within ygdQ at 2969.039 kb on - strand, within ygdQ at 2969.108 kb on - strand at 2969.108 kb on - strand at 2969.160 kb on - strand at 2969.160 kb on - strand at 2969.164 kb on + strand at 2969.172 kb on - strand at 2969.172 kb on - strand at 2969.193 kb on + strand at 2969.193 kb on - strand at 2969.202 kb on - strand at 2969.231 kb on + strand at 2969.242 kb on - strand at 2969.263 kb on + strand at 2969.263 kb on + strand at 2969.280 kb on - strand at 2969.281 kb on - strand at 2969.286 kb on - strand at 2969.327 kb on + strand, within ygdR at 2969.426 kb on + strand, within ygdR at 2969.439 kb on + strand, within ygdR at 2969.439 kb on + strand, within ygdR at 2969.454 kb on + strand, within ygdR at 2969.457 kb on + strand, within ygdR at 2969.457 kb on + strand, within ygdR at 2969.457 kb on + strand, within ygdR at 2969.458 kb on - strand, within ygdR at 2969.467 kb on - strand, within ygdR at 2969.616 kb on + strand at 2969.636 kb on + strand at 2969.642 kb on - strand at 2969.654 kb on + strand at 2969.693 kb on + strand at 2969.699 kb on - strand at 2969.746 kb on + strand, within tas at 2969.746 kb on + strand, within tas at 2969.753 kb on - strand, within tas at 2969.755 kb on - strand, within tas at 2969.872 kb on + strand, within tas at 2969.872 kb on + strand, within tas at 2969.912 kb on - strand, within tas at 2969.917 kb on + strand, within tas at 2969.976 kb on - strand, within tas at 2969.976 kb on - strand, within tas at 2969.984 kb on - strand, within tas at 2969.993 kb on + strand, within tas at 2970.254 kb on - strand, within tas at 2970.254 kb on - strand, within tas at 2970.283 kb on - strand, within tas at 2970.290 kb on + strand, within tas at 2970.324 kb on - strand, within tas at 2970.336 kb on + strand, within tas at 2970.336 kb on + strand, within tas at 2970.410 kb on + strand, within tas at 2970.471 kb on + strand, within tas at 2970.471 kb on + strand, within tas at 2970.480 kb on - strand, within tas at 2970.499 kb on + strand, within tas at 2970.499 kb on + strand, within tas at 2970.601 kb on - strand at 2970.635 kb on + strand at 2970.635 kb on + strand at 2970.654 kb on + strand at 2970.654 kb on + strand at 2970.654 kb on + strand at 2970.710 kb on + strand at 2970.781 kb on - strand at 2970.781 kb on - strand at 2970.900 kb on - strand, within ygeD at 2970.970 kb on - strand, within ygeD at 2971.028 kb on + strand, within ygeD at 2971.028 kb on + strand, within ygeD at 2971.031 kb on - strand, within ygeD at 2971.031 kb on - strand, within ygeD at 2971.033 kb on - strand, within ygeD at 2971.068 kb on - strand, within ygeD at 2971.154 kb on - strand, within ygeD at 2971.180 kb on + strand, within ygeD at 2971.303 kb on - strand, within ygeD at 2971.305 kb on + strand, within ygeD at 2971.360 kb on + strand, within ygeD at 2971.360 kb on + strand, within ygeD at 2971.438 kb on - strand, within ygeD at 2971.489 kb on + strand, within ygeD at 2971.489 kb on + strand, within ygeD at 2971.489 kb on + strand, within ygeD at 2971.571 kb on - strand, within ygeD at 2971.581 kb on + strand, within ygeD at 2971.617 kb on + strand, within ygeD at 2971.625 kb on - strand, within ygeD at 2971.625 kb on - strand, within ygeD at 2971.634 kb on + strand, within ygeD at 2971.656 kb on - strand, within ygeD at 2971.656 kb on - strand, within ygeD
Per-strain Table
Position Strand Gene LocusTag Fraction 1/10ON soft remove 2,968,620 - ygdQ b2832 0.25 -0.7 2,968,620 - ygdQ b2832 0.25 -1.8 2,968,648 + ygdQ b2832 0.29 +0.4 2,968,648 + ygdQ b2832 0.29 +0.6 2,968,674 + ygdQ b2832 0.32 +0.0 2,968,786 - ygdQ b2832 0.48 +0.9 2,968,829 + ygdQ b2832 0.54 +0.8 2,968,856 - ygdQ b2832 0.58 -0.7 2,968,880 + ygdQ b2832 0.61 +0.4 2,968,942 + ygdQ b2832 0.70 +0.0 2,968,942 + ygdQ b2832 0.70 +0.1 2,968,955 - ygdQ b2832 0.72 +0.8 2,969,039 - ygdQ b2832 0.84 +0.2 2,969,039 - ygdQ b2832 0.84 +0.9 2,969,108 - +1.9 2,969,108 - +0.4 2,969,160 - +0.7 2,969,160 - +0.8 2,969,164 + +0.0 2,969,172 - -0.0 2,969,172 - -0.2 2,969,193 + +0.6 2,969,193 - +0.9 2,969,202 - +0.4 2,969,231 + +0.1 2,969,242 - +0.9 2,969,263 + +1.1 2,969,263 + -0.1 2,969,280 - +0.1 2,969,281 - -0.1 2,969,286 - -0.2 2,969,327 + ygdR b2833 0.16 +0.2 2,969,426 + ygdR b2833 0.61 +0.9 2,969,439 + ygdR b2833 0.67 -0.1 2,969,439 + ygdR b2833 0.67 +0.1 2,969,454 + ygdR b2833 0.74 -0.1 2,969,457 + ygdR b2833 0.75 +0.5 2,969,457 + ygdR b2833 0.75 +0.4 2,969,457 + ygdR b2833 0.75 -0.4 2,969,458 - ygdR b2833 0.75 -0.6 2,969,467 - ygdR b2833 0.79 +1.1 2,969,616 + +0.9 2,969,636 + -1.1 2,969,642 - -0.1 2,969,654 + -0.6 2,969,693 + -0.6 2,969,699 - +0.5 2,969,746 + tas b2834 0.12 -1.2 2,969,746 + tas b2834 0.12 +0.3 2,969,753 - tas b2834 0.13 +0.4 2,969,755 - tas b2834 0.13 -0.2 2,969,872 + tas b2834 0.24 +0.2 2,969,872 + tas b2834 0.24 -0.1 2,969,912 - tas b2834 0.28 +0.4 2,969,917 + tas b2834 0.29 +0.3 2,969,976 - tas b2834 0.34 +2.0 2,969,976 - tas b2834 0.34 +0.3 2,969,984 - tas b2834 0.35 +0.4 2,969,993 + tas b2834 0.36 +0.6 2,970,254 - tas b2834 0.61 +0.0 2,970,254 - tas b2834 0.61 +0.2 2,970,283 - tas b2834 0.64 -0.7 2,970,290 + tas b2834 0.64 +0.0 2,970,324 - tas b2834 0.68 +0.2 2,970,336 + tas b2834 0.69 +0.3 2,970,336 + tas b2834 0.69 +0.9 2,970,410 + tas b2834 0.76 +0.2 2,970,471 + tas b2834 0.82 +0.9 2,970,471 + tas b2834 0.82 -0.2 2,970,480 - tas b2834 0.83 +0.2 2,970,499 + tas b2834 0.85 -0.7 2,970,499 + tas b2834 0.85 +1.6 2,970,601 - -0.4 2,970,635 + +0.3 2,970,635 + +0.2 2,970,654 + +2.2 2,970,654 + +1.8 2,970,654 + -0.5 2,970,710 + -0.6 2,970,781 - -0.2 2,970,781 - -0.8 2,970,900 - ygeD b2835 0.18 -0.1 2,970,970 - ygeD b2835 0.23 -0.2 2,971,028 + ygeD b2835 0.28 +0.5 2,971,028 + ygeD b2835 0.28 +0.5 2,971,031 - ygeD b2835 0.28 -1.8 2,971,031 - ygeD b2835 0.28 +1.3 2,971,033 - ygeD b2835 0.29 +0.7 2,971,068 - ygeD b2835 0.32 +1.0 2,971,154 - ygeD b2835 0.39 -0.5 2,971,180 + ygeD b2835 0.41 -0.2 2,971,303 - ygeD b2835 0.51 +0.8 2,971,305 + ygeD b2835 0.51 +0.4 2,971,360 + ygeD b2835 0.56 +0.1 2,971,360 + ygeD b2835 0.56 +0.9 2,971,438 - ygeD b2835 0.63 +0.2 2,971,489 + ygeD b2835 0.67 +0.1 2,971,489 + ygeD b2835 0.67 +0.3 2,971,489 + ygeD b2835 0.67 -0.4 2,971,571 - ygeD b2835 0.74 -0.0 2,971,581 + ygeD b2835 0.75 -0.3 2,971,617 + ygeD b2835 0.78 -0.4 2,971,625 - ygeD b2835 0.78 +0.2 2,971,625 - ygeD b2835 0.78 +0.4 2,971,634 + ygeD b2835 0.79 +0.2 2,971,656 - ygeD b2835 0.81 +0.9 2,971,656 - ygeD b2835 0.81 +0.6
Or see this region's nucleotide sequence