Experiment: Atjh2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0434 and Atu0435 are separated by 56 nucleotides Atu0435 and Atu0436 are separated by 242 nucleotides
Atu0434: Atu0434 - 2'-deoxycytidine 5'-triphosphate deaminase, at 429,508 to 430,620
Atu0434
Atu0435: Atu0435 - tRNA-Gly, at 430,677 to 430,750
Atu0435
Atu0436: Atu0436 - hypothetical protein, at 430,993 to 433,149
Atu0436
Position (kb) 430
431 Strain fitness (log2 ratio) -2
-1
0
1
2 at 429.811 kb on - strand, within Atu0434 at 430.141 kb on + strand, within Atu0434 at 430.405 kb on + strand, within Atu0434 at 430.665 kb on + strand at 430.680 kb on + strand at 430.717 kb on + strand, within Atu0435 at 430.725 kb on - strand, within Atu0435 at 430.856 kb on - strand at 430.875 kb on + strand at 430.875 kb on + strand at 430.875 kb on + strand at 430.883 kb on - strand at 430.929 kb on - strand at 430.940 kb on - strand at 431.009 kb on - strand at 431.100 kb on - strand at 431.125 kb on - strand at 431.145 kb on + strand at 431.147 kb on - strand at 431.147 kb on - strand at 431.161 kb on + strand at 431.169 kb on - strand at 431.191 kb on - strand at 431.271 kb on + strand, within Atu0436 at 431.327 kb on + strand, within Atu0436 at 431.420 kb on - strand, within Atu0436 at 431.739 kb on + strand, within Atu0436
Per-strain Table
Position Strand Gene LocusTag Fraction Atjh2 remove 429,811 - Atu0434 0.27 +1.9 430,141 + Atu0434 0.57 -1.8 430,405 + Atu0434 0.81 -0.9 430,665 + -0.7 430,680 + -0.9 430,717 + Atu0435 0.54 -0.4 430,725 - Atu0435 0.65 -2.1 430,856 - -0.8 430,875 + -1.9 430,875 + -1.1 430,875 + -2.4 430,883 - -0.3 430,929 - -1.7 430,940 - -2.7 431,009 - +0.6 431,100 - -1.5 431,125 - -1.6 431,145 + -1.5 431,147 - -1.4 431,147 - -0.5 431,161 + -1.3 431,169 - -0.4 431,191 - -0.1 431,271 + Atu0436 0.13 -2.4 431,327 + Atu0436 0.15 -1.3 431,420 - Atu0436 0.20 -1.6 431,739 + Atu0436 0.35 -1.3
Or see this region's nucleotide sequence