Strain Fitness in Escherichia coli BW25113 around b4314

Experiment: 1/2ON stiff

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfimE and fimA are separated by 481 nucleotidesfimA and fimI are separated by 64 nucleotidesfimI and fimC are separated by 36 nucleotides b4313: fimE - tyrosine recombinase/inversion of on/off regulator of fimA (NCBI), at 4,540,060 to 4,540,656 fimE b4314: fimA - major type 1 subunit fimbrin (pilin) (NCBI), at 4,541,138 to 4,541,686 fimA b4315: fimI - fimbrial protein (VIMSS), at 4,541,751 to 4,542,290 fimI b4316: fimC - periplasmic chaperone, required for type 1 fimbriae (VIMSS), at 4,542,327 to 4,543,052 fimC Position (kb) 4541 4542Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4540.169 kb on + strand, within fimEat 4540.175 kb on + strand, within fimEat 4540.179 kb on + strand, within fimEat 4540.179 kb on + strand, within fimEat 4540.181 kb on + strand, within fimEat 4540.181 kb on + strand, within fimEat 4540.181 kb on + strand, within fimEat 4540.183 kb on - strand, within fimEat 4540.184 kb on + strand, within fimEat 4540.192 kb on + strand, within fimEat 4540.192 kb on - strand, within fimEat 4540.192 kb on - strand, within fimEat 4540.192 kb on - strand, within fimEat 4540.192 kb on - strand, within fimEat 4540.215 kb on - strand, within fimEat 4540.215 kb on - strand, within fimEat 4540.215 kb on - strand, within fimEat 4540.279 kb on - strand, within fimEat 4540.279 kb on - strand, within fimEat 4540.279 kb on - strand, within fimEat 4540.294 kb on - strand, within fimEat 4540.294 kb on - strand, within fimEat 4540.294 kb on - strand, within fimEat 4540.296 kb on + strand, within fimEat 4540.296 kb on + strand, within fimEat 4540.296 kb on + strand, within fimEat 4540.296 kb on + strand, within fimEat 4540.296 kb on + strand, within fimEat 4540.304 kb on - strand, within fimEat 4540.304 kb on - strand, within fimEat 4540.304 kb on - strand, within fimEat 4540.304 kb on - strand, within fimEat 4540.306 kb on - strand, within fimEat 4540.311 kb on + strand, within fimEat 4540.318 kb on + strand, within fimEat 4540.318 kb on + strand, within fimEat 4540.318 kb on + strand, within fimEat 4540.318 kb on + strand, within fimEat 4540.318 kb on + strand, within fimEat 4540.319 kb on + strand, within fimEat 4540.326 kb on - strand, within fimEat 4540.326 kb on - strand, within fimEat 4540.326 kb on - strand, within fimEat 4540.326 kb on - strand, within fimEat 4540.326 kb on - strand, within fimEat 4540.342 kb on + strand, within fimEat 4540.342 kb on + strand, within fimEat 4540.343 kb on + strand, within fimEat 4540.361 kb on - strand, within fimEat 4540.361 kb on - strand, within fimEat 4540.397 kb on - strand, within fimEat 4540.407 kb on - strand, within fimEat 4540.412 kb on - strand, within fimEat 4540.413 kb on + strand, within fimEat 4540.430 kb on + strand, within fimEat 4540.430 kb on + strand, within fimEat 4540.440 kb on - strand, within fimEat 4540.440 kb on - strand, within fimEat 4540.450 kb on + strand, within fimEat 4540.450 kb on + strand, within fimEat 4540.450 kb on + strand, within fimEat 4540.455 kb on + strand, within fimEat 4540.455 kb on + strand, within fimEat 4540.458 kb on - strand, within fimEat 4540.458 kb on - strand, within fimEat 4540.458 kb on - strand, within fimEat 4540.461 kb on + strand, within fimEat 4540.463 kb on + strand, within fimEat 4540.465 kb on + strand, within fimEat 4540.465 kb on + strand, within fimEat 4540.465 kb on + strand, within fimEat 4540.465 kb on + strand, within fimEat 4540.469 kb on - strand, within fimEat 4540.469 kb on - strand, within fimEat 4540.470 kb on - strand, within fimEat 4540.470 kb on - strand, within fimEat 4540.470 kb on - strand, within fimEat 4540.471 kb on - strand, within fimEat 4540.471 kb on - strand, within fimEat 4540.471 kb on - strand, within fimEat 4540.471 kb on - strand, within fimEat 4540.479 kb on + strand, within fimEat 4540.482 kb on - strand, within fimEat 4540.483 kb on - strand, within fimEat 4540.487 kb on + strand, within fimEat 4540.487 kb on + strand, within fimEat 4540.495 kb on - strand, within fimEat 4540.508 kb on + strand, within fimEat 4540.513 kb on + strand, within fimEat 4540.549 kb on - strand, within fimEat 4540.562 kb on - strand, within fimEat 4540.572 kb on - strand, within fimEat 4540.574 kb on - strand, within fimEat 4540.574 kb on - strand, within fimEat 4540.578 kb on + strand, within fimEat 4540.713 kb on + strandat 4540.718 kb on - strandat 4540.721 kb on - strandat 4540.847 kb on - strandat 4541.006 kb on + strandat 4541.049 kb on + strandat 4541.052 kb on - strandat 4541.062 kb on + strandat 4541.089 kb on - strandat 4541.161 kb on - strandat 4541.187 kb on + strandat 4541.190 kb on + strandat 4541.208 kb on + strand, within fimAat 4541.208 kb on + strand, within fimAat 4541.242 kb on - strand, within fimAat 4541.314 kb on + strand, within fimAat 4541.338 kb on + strand, within fimAat 4541.340 kb on - strand, within fimAat 4541.340 kb on - strand, within fimAat 4541.468 kb on + strand, within fimAat 4541.488 kb on - strand, within fimAat 4541.488 kb on - strand, within fimAat 4541.493 kb on - strand, within fimAat 4541.493 kb on - strand, within fimAat 4541.515 kb on - strand, within fimAat 4541.596 kb on - strand, within fimAat 4541.610 kb on - strand, within fimAat 4541.628 kb on + strand, within fimAat 4541.638 kb on + strandat 4541.646 kb on + strandat 4541.679 kb on + strandat 4541.679 kb on + strandat 4541.680 kb on - strandat 4541.680 kb on - strandat 4541.683 kb on + strandat 4541.690 kb on + strandat 4541.709 kb on + strandat 4541.714 kb on + strandat 4541.721 kb on + strandat 4541.723 kb on + strandat 4541.723 kb on + strandat 4541.724 kb on + strandat 4541.724 kb on + strandat 4541.724 kb on + strandat 4541.797 kb on - strandat 4541.802 kb on - strandat 4541.802 kb on - strandat 4541.863 kb on + strand, within fimIat 4541.882 kb on + strand, within fimIat 4541.890 kb on - strand, within fimIat 4541.917 kb on - strand, within fimIat 4541.917 kb on - strand, within fimIat 4541.920 kb on - strand, within fimIat 4541.922 kb on - strand, within fimIat 4541.922 kb on - strand, within fimIat 4541.924 kb on + strand, within fimIat 4541.932 kb on + strand, within fimIat 4541.932 kb on + strand, within fimIat 4541.960 kb on - strand, within fimIat 4541.960 kb on - strand, within fimIat 4541.965 kb on - strand, within fimIat 4541.965 kb on - strand, within fimIat 4541.967 kb on - strand, within fimIat 4541.967 kb on - strand, within fimIat 4541.996 kb on + strand, within fimIat 4542.003 kb on + strand, within fimIat 4542.014 kb on - strand, within fimIat 4542.014 kb on - strand, within fimIat 4542.019 kb on + strand, within fimIat 4542.019 kb on + strand, within fimIat 4542.033 kb on - strand, within fimIat 4542.038 kb on - strand, within fimIat 4542.038 kb on - strand, within fimIat 4542.040 kb on + strand, within fimIat 4542.075 kb on + strand, within fimIat 4542.075 kb on + strand, within fimIat 4542.075 kb on + strand, within fimIat 4542.081 kb on - strand, within fimIat 4542.081 kb on - strand, within fimIat 4542.084 kb on + strand, within fimIat 4542.114 kb on + strand, within fimIat 4542.126 kb on + strand, within fimIat 4542.176 kb on + strand, within fimIat 4542.176 kb on + strand, within fimIat 4542.176 kb on + strand, within fimIat 4542.210 kb on + strand, within fimIat 4542.210 kb on + strand, within fimIat 4542.210 kb on + strand, within fimIat 4542.215 kb on + strand, within fimIat 4542.215 kb on + strand, within fimIat 4542.220 kb on + strand, within fimIat 4542.236 kb on + strand, within fimIat 4542.236 kb on + strand, within fimIat 4542.243 kb on - strandat 4542.252 kb on + strandat 4542.252 kb on + strandat 4542.258 kb on + strandat 4542.258 kb on + strandat 4542.263 kb on + strandat 4542.266 kb on + strandat 4542.266 kb on + strandat 4542.268 kb on + strandat 4542.272 kb on + strandat 4542.272 kb on + strandat 4542.272 kb on + strandat 4542.272 kb on + strandat 4542.272 kb on + strandat 4542.283 kb on + strandat 4542.283 kb on + strandat 4542.314 kb on + strandat 4542.314 kb on + strandat 4542.317 kb on + strandat 4542.317 kb on + strandat 4542.317 kb on + strandat 4542.319 kb on + strandat 4542.319 kb on + strandat 4542.331 kb on + strandat 4542.339 kb on - strandat 4542.339 kb on - strandat 4542.345 kb on + strandat 4542.390 kb on + strandat 4542.393 kb on + strandat 4542.393 kb on + strandat 4542.393 kb on + strandat 4542.393 kb on - strandat 4542.401 kb on - strand, within fimCat 4542.401 kb on - strand, within fimCat 4542.401 kb on - strand, within fimCat 4542.406 kb on + strand, within fimCat 4542.406 kb on + strand, within fimCat 4542.409 kb on + strand, within fimCat 4542.409 kb on + strand, within fimCat 4542.414 kb on + strand, within fimCat 4542.414 kb on + strand, within fimCat 4542.424 kb on - strand, within fimCat 4542.425 kb on - strand, within fimCat 4542.427 kb on + strand, within fimCat 4542.429 kb on + strand, within fimCat 4542.429 kb on + strand, within fimCat 4542.429 kb on + strand, within fimCat 4542.430 kb on + strand, within fimCat 4542.430 kb on + strand, within fimCat 4542.431 kb on + strand, within fimCat 4542.431 kb on + strand, within fimCat 4542.431 kb on + strand, within fimCat 4542.440 kb on + strand, within fimCat 4542.440 kb on + strand, within fimCat 4542.440 kb on + strand, within fimCat 4542.440 kb on + strand, within fimCat 4542.440 kb on + strand, within fimCat 4542.440 kb on + strand, within fimCat 4542.440 kb on + strand, within fimCat 4542.440 kb on + strand, within fimCat 4542.440 kb on + strand, within fimCat 4542.440 kb on + strand, within fimCat 4542.441 kb on + strand, within fimCat 4542.447 kb on + strand, within fimCat 4542.559 kb on + strand, within fimCat 4542.559 kb on + strand, within fimCat 4542.588 kb on + strand, within fimCat 4542.589 kb on + strand, within fimCat 4542.590 kb on + strand, within fimCat 4542.596 kb on + strand, within fimC

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1/2ON stiff
remove
4,540,169 + fimE b4313 0.18 -0.4
4,540,175 + fimE b4313 0.19 +0.2
4,540,179 + fimE b4313 0.20 -0.4
4,540,179 + fimE b4313 0.20 -1.4
4,540,181 + fimE b4313 0.20 -0.4
4,540,181 + fimE b4313 0.20 +1.2
4,540,181 + fimE b4313 0.20 -0.9
4,540,183 - fimE b4313 0.21 -0.4
4,540,184 + fimE b4313 0.21 -2.9
4,540,192 + fimE b4313 0.22 +1.2
4,540,192 - fimE b4313 0.22 -0.2
4,540,192 - fimE b4313 0.22 -0.4
4,540,192 - fimE b4313 0.22 -0.7
4,540,192 - fimE b4313 0.22 -0.8
4,540,215 - fimE b4313 0.26 -0.4
4,540,215 - fimE b4313 0.26 -0.4
4,540,215 - fimE b4313 0.26 -0.4
4,540,279 - fimE b4313 0.37 +0.0
4,540,279 - fimE b4313 0.37 -0.2
4,540,279 - fimE b4313 0.37 -1.6
4,540,294 - fimE b4313 0.39 -0.8
4,540,294 - fimE b4313 0.39 +0.3
4,540,294 - fimE b4313 0.39 +0.6
4,540,296 + fimE b4313 0.40 -0.4
4,540,296 + fimE b4313 0.40 -0.4
4,540,296 + fimE b4313 0.40 -0.4
4,540,296 + fimE b4313 0.40 -1.4
4,540,296 + fimE b4313 0.40 -0.4
4,540,304 - fimE b4313 0.41 +0.1
4,540,304 - fimE b4313 0.41 -1.4
4,540,304 - fimE b4313 0.41 -1.5
4,540,304 - fimE b4313 0.41 +0.6
4,540,306 - fimE b4313 0.41 -1.0
4,540,311 + fimE b4313 0.42 -0.4
4,540,318 + fimE b4313 0.43 +0.2
4,540,318 + fimE b4313 0.43 -0.7
4,540,318 + fimE b4313 0.43 -2.7
4,540,318 + fimE b4313 0.43 +1.5
4,540,318 + fimE b4313 0.43 -0.4
4,540,319 + fimE b4313 0.43 +0.2
4,540,326 - fimE b4313 0.45 -0.6
4,540,326 - fimE b4313 0.45 +0.0
4,540,326 - fimE b4313 0.45 +0.6
4,540,326 - fimE b4313 0.45 -1.0
4,540,326 - fimE b4313 0.45 -0.7
4,540,342 + fimE b4313 0.47 +0.4
4,540,342 + fimE b4313 0.47 +1.2
4,540,343 + fimE b4313 0.47 -0.9
4,540,361 - fimE b4313 0.50 -1.4
4,540,361 - fimE b4313 0.50 -0.8
4,540,397 - fimE b4313 0.56 +0.3
4,540,407 - fimE b4313 0.58 -0.7
4,540,412 - fimE b4313 0.59 -1.5
4,540,413 + fimE b4313 0.59 +0.5
4,540,430 + fimE b4313 0.62 -0.4
4,540,430 + fimE b4313 0.62 +0.2
4,540,440 - fimE b4313 0.64 -1.5
4,540,440 - fimE b4313 0.64 -0.7
4,540,450 + fimE b4313 0.65 +0.6
4,540,450 + fimE b4313 0.65 +2.2
4,540,450 + fimE b4313 0.65 +0.1
4,540,455 + fimE b4313 0.66 -2.7
4,540,455 + fimE b4313 0.66 -1.7
4,540,458 - fimE b4313 0.67 -1.4
4,540,458 - fimE b4313 0.67 +0.2
4,540,458 - fimE b4313 0.67 -0.3
4,540,461 + fimE b4313 0.67 -0.0
4,540,463 + fimE b4313 0.68 -0.4
4,540,465 + fimE b4313 0.68 -0.4
4,540,465 + fimE b4313 0.68 -0.9
4,540,465 + fimE b4313 0.68 +0.6
4,540,465 + fimE b4313 0.68 -1.4
4,540,469 - fimE b4313 0.69 +0.6
4,540,469 - fimE b4313 0.69 +0.0
4,540,470 - fimE b4313 0.69 +1.5
4,540,470 - fimE b4313 0.69 +1.0
4,540,470 - fimE b4313 0.69 -1.0
4,540,471 - fimE b4313 0.69 +1.2
4,540,471 - fimE b4313 0.69 -1.4
4,540,471 - fimE b4313 0.69 -1.7
4,540,471 - fimE b4313 0.69 -0.4
4,540,479 + fimE b4313 0.70 +0.2
4,540,482 - fimE b4313 0.71 -1.4
4,540,483 - fimE b4313 0.71 +0.5
4,540,487 + fimE b4313 0.72 -0.4
4,540,487 + fimE b4313 0.72 -0.4
4,540,495 - fimE b4313 0.73 -0.4
4,540,508 + fimE b4313 0.75 +1.2
4,540,513 + fimE b4313 0.76 -0.9
4,540,549 - fimE b4313 0.82 -0.5
4,540,562 - fimE b4313 0.84 -0.1
4,540,572 - fimE b4313 0.86 -1.6
4,540,574 - fimE b4313 0.86 +1.2
4,540,574 - fimE b4313 0.86 -0.7
4,540,578 + fimE b4313 0.87 -1.4
4,540,713 + +0.1
4,540,718 - +1.4
4,540,721 - -0.7
4,540,847 - -1.4
4,541,006 + +0.3
4,541,049 + -0.2
4,541,052 - -0.1
4,541,062 + -0.4
4,541,089 - -0.3
4,541,161 - +0.3
4,541,187 + +0.4
4,541,190 + +0.8
4,541,208 + fimA b4314 0.13 +0.3
4,541,208 + fimA b4314 0.13 -1.2
4,541,242 - fimA b4314 0.19 +0.1
4,541,314 + fimA b4314 0.32 +0.1
4,541,338 + fimA b4314 0.36 -0.6
4,541,340 - fimA b4314 0.37 -0.6
4,541,340 - fimA b4314 0.37 +0.5
4,541,468 + fimA b4314 0.60 -0.1
4,541,488 - fimA b4314 0.64 +0.2
4,541,488 - fimA b4314 0.64 +0.1
4,541,493 - fimA b4314 0.65 +1.3
4,541,493 - fimA b4314 0.65 -0.5
4,541,515 - fimA b4314 0.69 +0.5
4,541,596 - fimA b4314 0.83 +0.3
4,541,610 - fimA b4314 0.86 -0.1
4,541,628 + fimA b4314 0.89 -0.2
4,541,638 + +0.2
4,541,646 + -0.3
4,541,679 + -0.2
4,541,679 + +0.1
4,541,680 - -0.6
4,541,680 - -1.4
4,541,683 + -0.3
4,541,690 + +0.2
4,541,709 + +0.4
4,541,714 + -0.2
4,541,721 + +0.9
4,541,723 + -0.2
4,541,723 + +0.3
4,541,724 + +0.1
4,541,724 + +0.1
4,541,724 + +1.2
4,541,797 - -0.0
4,541,802 - -0.7
4,541,802 - -0.4
4,541,863 + fimI b4315 0.21 -0.4
4,541,882 + fimI b4315 0.24 +0.2
4,541,890 - fimI b4315 0.26 +1.2
4,541,917 - fimI b4315 0.31 -0.4
4,541,917 - fimI b4315 0.31 +0.0
4,541,920 - fimI b4315 0.31 +0.6
4,541,922 - fimI b4315 0.32 -1.2
4,541,922 - fimI b4315 0.32 -0.1
4,541,924 + fimI b4315 0.32 -1.7
4,541,932 + fimI b4315 0.34 +0.4
4,541,932 + fimI b4315 0.34 -0.1
4,541,960 - fimI b4315 0.39 +1.2
4,541,960 - fimI b4315 0.39 +0.3
4,541,965 - fimI b4315 0.40 +0.6
4,541,965 - fimI b4315 0.40 -1.4
4,541,967 - fimI b4315 0.40 -0.1
4,541,967 - fimI b4315 0.40 -0.2
4,541,996 + fimI b4315 0.45 -0.2
4,542,003 + fimI b4315 0.47 +0.2
4,542,014 - fimI b4315 0.49 -0.8
4,542,014 - fimI b4315 0.49 +0.2
4,542,019 + fimI b4315 0.50 +0.5
4,542,019 + fimI b4315 0.50 -0.2
4,542,033 - fimI b4315 0.52 -0.5
4,542,038 - fimI b4315 0.53 +2.0
4,542,038 - fimI b4315 0.53 -2.4
4,542,040 + fimI b4315 0.54 -0.5
4,542,075 + fimI b4315 0.60 +1.0
4,542,075 + fimI b4315 0.60 +0.2
4,542,075 + fimI b4315 0.60 -0.9
4,542,081 - fimI b4315 0.61 -1.4
4,542,081 - fimI b4315 0.61 -1.9
4,542,084 + fimI b4315 0.62 +0.2
4,542,114 + fimI b4315 0.67 +0.1
4,542,126 + fimI b4315 0.69 -0.6
4,542,176 + fimI b4315 0.79 +0.0
4,542,176 + fimI b4315 0.79 -0.4
4,542,176 + fimI b4315 0.79 -0.0
4,542,210 + fimI b4315 0.85 -0.1
4,542,210 + fimI b4315 0.85 -0.2
4,542,210 + fimI b4315 0.85 +0.3
4,542,215 + fimI b4315 0.86 -0.0
4,542,215 + fimI b4315 0.86 -0.4
4,542,220 + fimI b4315 0.87 -0.9
4,542,236 + fimI b4315 0.90 +0.1
4,542,236 + fimI b4315 0.90 -0.1
4,542,243 - -0.4
4,542,252 + +0.5
4,542,252 + +0.1
4,542,258 + +0.2
4,542,258 + +0.4
4,542,263 + +1.2
4,542,266 + +0.1
4,542,266 + +0.5
4,542,268 + +0.0
4,542,272 + -0.9
4,542,272 + -0.4
4,542,272 + +1.0
4,542,272 + -0.4
4,542,272 + -0.2
4,542,283 + -0.7
4,542,283 + -0.1
4,542,314 + +0.6
4,542,314 + +0.8
4,542,317 + -0.4
4,542,317 + -1.7
4,542,317 + -0.5
4,542,319 + -0.6
4,542,319 + -0.4
4,542,331 + +0.6
4,542,339 - -0.4
4,542,339 - -0.4
4,542,345 + +1.2
4,542,390 + -1.9
4,542,393 + -0.4
4,542,393 + -1.4
4,542,393 + -0.4
4,542,393 - -0.4
4,542,401 - fimC b4316 0.10 -0.4
4,542,401 - fimC b4316 0.10 -0.4
4,542,401 - fimC b4316 0.10 -0.4
4,542,406 + fimC b4316 0.11 -0.4
4,542,406 + fimC b4316 0.11 -0.8
4,542,409 + fimC b4316 0.11 -1.4
4,542,409 + fimC b4316 0.11 -0.4
4,542,414 + fimC b4316 0.12 -0.9
4,542,414 + fimC b4316 0.12 -0.4
4,542,424 - fimC b4316 0.13 -0.4
4,542,425 - fimC b4316 0.13 -0.4
4,542,427 + fimC b4316 0.14 -0.7
4,542,429 + fimC b4316 0.14 -2.7
4,542,429 + fimC b4316 0.14 -0.2
4,542,429 + fimC b4316 0.14 +0.9
4,542,430 + fimC b4316 0.14 +0.0
4,542,430 + fimC b4316 0.14 +0.6
4,542,431 + fimC b4316 0.14 +0.9
4,542,431 + fimC b4316 0.14 +0.2
4,542,431 + fimC b4316 0.14 +0.2
4,542,440 + fimC b4316 0.16 -1.9
4,542,440 + fimC b4316 0.16 -0.0
4,542,440 + fimC b4316 0.16 +0.5
4,542,440 + fimC b4316 0.16 -0.2
4,542,440 + fimC b4316 0.16 +0.3
4,542,440 + fimC b4316 0.16 +0.4
4,542,440 + fimC b4316 0.16 +0.6
4,542,440 + fimC b4316 0.16 +0.2
4,542,440 + fimC b4316 0.16 -0.9
4,542,440 + fimC b4316 0.16 -1.2
4,542,441 + fimC b4316 0.16 +0.2
4,542,447 + fimC b4316 0.17 +0.2
4,542,559 + fimC b4316 0.32 -1.9
4,542,559 + fimC b4316 0.32 -0.4
4,542,588 + fimC b4316 0.36 -0.9
4,542,589 + fimC b4316 0.36 -0.4
4,542,590 + fimC b4316 0.36 -0.4
4,542,596 + fimC b4316 0.37 -0.5

Or see this region's nucleotide sequence