Experiment: 1/2ON stiff
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dmsA and dmsB are separated by 10 nucleotides dmsB and dmsC are separated by 1 nucleotides dmsC and ycaC are separated by 34 nucleotides
b0894: dmsA - anaerobic dimethyl sulfoxide reductase subunit A (VIMSS), at 940,182 to 942,626
dmsA
b0895: dmsB - dimethyl sulfoxide reductase, anaerobic, subunit B (NCBI), at 942,637 to 943,254
dmsB
b0896: dmsC - dimethyl sulfoxide reductase, anaerobic, subunit C (NCBI), at 943,256 to 944,119
dmsC
b0897: ycaC - predicted hydrolase (NCBI), at 944,154 to 944,780
ycaC
Position (kb) 942
943
944 Strain fitness (log2 ratio) -1
0
1 at 941.704 kb on - strand, within dmsA at 941.704 kb on - strand, within dmsA at 941.720 kb on - strand, within dmsA at 941.723 kb on + strand, within dmsA at 941.723 kb on + strand, within dmsA at 941.749 kb on + strand, within dmsA at 941.873 kb on - strand, within dmsA at 941.873 kb on - strand, within dmsA at 941.878 kb on + strand, within dmsA at 941.878 kb on + strand, within dmsA at 941.942 kb on + strand, within dmsA at 941.946 kb on - strand, within dmsA at 941.975 kb on - strand, within dmsA at 942.104 kb on + strand, within dmsA at 942.177 kb on - strand, within dmsA at 942.269 kb on + strand, within dmsA at 942.432 kb on + strand at 942.485 kb on + strand at 942.485 kb on + strand at 942.493 kb on - strand at 942.501 kb on - strand at 942.626 kb on - strand at 942.693 kb on - strand at 942.850 kb on + strand, within dmsB at 942.860 kb on + strand, within dmsB at 942.863 kb on - strand, within dmsB at 942.971 kb on - strand, within dmsB at 943.027 kb on - strand, within dmsB at 943.027 kb on - strand, within dmsB at 943.107 kb on - strand, within dmsB at 943.182 kb on + strand, within dmsB at 943.319 kb on - strand at 943.319 kb on - strand at 943.348 kb on + strand, within dmsC at 943.348 kb on + strand, within dmsC at 943.348 kb on + strand, within dmsC at 943.412 kb on - strand, within dmsC at 943.412 kb on - strand, within dmsC at 943.485 kb on + strand, within dmsC at 943.661 kb on + strand, within dmsC at 943.663 kb on + strand, within dmsC at 943.663 kb on - strand, within dmsC at 943.669 kb on - strand, within dmsC at 943.672 kb on + strand, within dmsC at 943.680 kb on - strand, within dmsC at 943.682 kb on + strand, within dmsC at 943.732 kb on + strand, within dmsC at 943.758 kb on + strand, within dmsC at 943.833 kb on - strand, within dmsC at 943.833 kb on - strand, within dmsC at 943.878 kb on - strand, within dmsC at 943.910 kb on - strand, within dmsC at 943.977 kb on - strand, within dmsC at 943.985 kb on - strand, within dmsC at 944.080 kb on - strand at 944.082 kb on + strand at 944.082 kb on + strand at 944.082 kb on - strand at 944.086 kb on + strand at 944.093 kb on + strand at 944.101 kb on - strand at 944.105 kb on + strand at 944.105 kb on + strand at 944.121 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1/2ON stiff remove 941,704 - dmsA b0894 0.62 -0.4 941,704 - dmsA b0894 0.62 +0.9 941,720 - dmsA b0894 0.63 +0.1 941,723 + dmsA b0894 0.63 +0.1 941,723 + dmsA b0894 0.63 +0.2 941,749 + dmsA b0894 0.64 +0.1 941,873 - dmsA b0894 0.69 +1.3 941,873 - dmsA b0894 0.69 +0.6 941,878 + dmsA b0894 0.69 +1.0 941,878 + dmsA b0894 0.69 +0.2 941,942 + dmsA b0894 0.72 +0.3 941,946 - dmsA b0894 0.72 +0.5 941,975 - dmsA b0894 0.73 -0.6 942,104 + dmsA b0894 0.79 +1.3 942,177 - dmsA b0894 0.82 -0.2 942,269 + dmsA b0894 0.85 -0.2 942,432 + +0.2 942,485 + -0.8 942,485 + +0.1 942,493 - +0.6 942,501 - -0.9 942,626 - +0.5 942,693 - +0.1 942,850 + dmsB b0895 0.34 -1.6 942,860 + dmsB b0895 0.36 -0.5 942,863 - dmsB b0895 0.37 -0.5 942,971 - dmsB b0895 0.54 +0.2 943,027 - dmsB b0895 0.63 +0.4 943,027 - dmsB b0895 0.63 -1.1 943,107 - dmsB b0895 0.76 -1.0 943,182 + dmsB b0895 0.88 -0.0 943,319 - -0.6 943,319 - -0.1 943,348 + dmsC b0896 0.11 -0.5 943,348 + dmsC b0896 0.11 -0.4 943,348 + dmsC b0896 0.11 +0.1 943,412 - dmsC b0896 0.18 -0.3 943,412 - dmsC b0896 0.18 +0.1 943,485 + dmsC b0896 0.27 +0.5 943,661 + dmsC b0896 0.47 -0.4 943,663 + dmsC b0896 0.47 +0.4 943,663 - dmsC b0896 0.47 +0.2 943,669 - dmsC b0896 0.48 -0.3 943,672 + dmsC b0896 0.48 +0.1 943,680 - dmsC b0896 0.49 +1.5 943,682 + dmsC b0896 0.49 -0.3 943,732 + dmsC b0896 0.55 +0.2 943,758 + dmsC b0896 0.58 -0.3 943,833 - dmsC b0896 0.67 -0.3 943,833 - dmsC b0896 0.67 -0.3 943,878 - dmsC b0896 0.72 -0.3 943,910 - dmsC b0896 0.76 -0.1 943,977 - dmsC b0896 0.83 +0.6 943,985 - dmsC b0896 0.84 +1.0 944,080 - +0.0 944,082 + +1.0 944,082 + +0.8 944,082 - +0.1 944,086 + +0.7 944,093 + +0.2 944,101 - +0.3 944,105 + +0.6 944,105 + -1.2 944,121 + -0.3
Or see this region's nucleotide sequence