Strain Fitness in Escherichia coli BW25113 around b4314
Experiment: 1/2ON soft
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 1/2ON soft |
---|---|---|---|---|---|
remove | |||||
4,540,169 | + | fimE | b4313 | 0.18 | -0.2 |
4,540,175 | + | fimE | b4313 | 0.19 | -1.2 |
4,540,179 | + | fimE | b4313 | 0.20 | -0.2 |
4,540,179 | + | fimE | b4313 | 0.20 | -1.2 |
4,540,181 | + | fimE | b4313 | 0.20 | -0.2 |
4,540,181 | + | fimE | b4313 | 0.20 | -0.2 |
4,540,181 | + | fimE | b4313 | 0.20 | -0.6 |
4,540,183 | - | fimE | b4313 | 0.21 | -0.2 |
4,540,184 | + | fimE | b4313 | 0.21 | -0.5 |
4,540,192 | + | fimE | b4313 | 0.22 | -0.2 |
4,540,192 | - | fimE | b4313 | 0.22 | -1.1 |
4,540,192 | - | fimE | b4313 | 0.22 | -1.2 |
4,540,192 | - | fimE | b4313 | 0.22 | +0.0 |
4,540,192 | - | fimE | b4313 | 0.22 | -0.6 |
4,540,215 | - | fimE | b4313 | 0.26 | -0.2 |
4,540,215 | - | fimE | b4313 | 0.26 | -1.2 |
4,540,215 | - | fimE | b4313 | 0.26 | -0.2 |
4,540,279 | - | fimE | b4313 | 0.37 | -1.4 |
4,540,279 | - | fimE | b4313 | 0.37 | -0.2 |
4,540,279 | - | fimE | b4313 | 0.37 | -0.0 |
4,540,294 | - | fimE | b4313 | 0.39 | -2.2 |
4,540,294 | - | fimE | b4313 | 0.39 | -0.5 |
4,540,294 | - | fimE | b4313 | 0.39 | +0.9 |
4,540,296 | + | fimE | b4313 | 0.40 | -0.2 |
4,540,296 | + | fimE | b4313 | 0.40 | +0.8 |
4,540,296 | + | fimE | b4313 | 0.40 | -0.2 |
4,540,296 | + | fimE | b4313 | 0.40 | -1.2 |
4,540,296 | + | fimE | b4313 | 0.40 | -0.2 |
4,540,304 | - | fimE | b4313 | 0.41 | +0.0 |
4,540,304 | - | fimE | b4313 | 0.41 | -2.8 |
4,540,304 | - | fimE | b4313 | 0.41 | -1.4 |
4,540,304 | - | fimE | b4313 | 0.41 | +0.8 |
4,540,306 | - | fimE | b4313 | 0.41 | -1.2 |
4,540,311 | + | fimE | b4313 | 0.42 | -0.2 |
4,540,318 | + | fimE | b4313 | 0.43 | -1.2 |
4,540,318 | + | fimE | b4313 | 0.43 | +0.3 |
4,540,318 | + | fimE | b4313 | 0.43 | -2.5 |
4,540,318 | + | fimE | b4313 | 0.43 | +0.4 |
4,540,318 | + | fimE | b4313 | 0.43 | -1.2 |
4,540,319 | + | fimE | b4313 | 0.43 | +0.4 |
4,540,326 | - | fimE | b4313 | 0.45 | -0.2 |
4,540,326 | - | fimE | b4313 | 0.45 | -0.7 |
4,540,326 | - | fimE | b4313 | 0.45 | +1.8 |
4,540,326 | - | fimE | b4313 | 0.45 | -0.6 |
4,540,326 | - | fimE | b4313 | 0.45 | -0.8 |
4,540,342 | + | fimE | b4313 | 0.47 | +0.2 |
4,540,342 | + | fimE | b4313 | 0.47 | +0.8 |
4,540,343 | + | fimE | b4313 | 0.47 | -1.8 |
4,540,361 | - | fimE | b4313 | 0.50 | -0.2 |
4,540,361 | - | fimE | b4313 | 0.50 | -2.2 |
4,540,397 | - | fimE | b4313 | 0.56 | +0.0 |
4,540,407 | - | fimE | b4313 | 0.58 | -1.5 |
4,540,412 | - | fimE | b4313 | 0.59 | -0.2 |
4,540,413 | + | fimE | b4313 | 0.59 | +0.6 |
4,540,430 | + | fimE | b4313 | 0.62 | +1.8 |
4,540,430 | + | fimE | b4313 | 0.62 | +0.4 |
4,540,440 | - | fimE | b4313 | 0.64 | -0.6 |
4,540,440 | - | fimE | b4313 | 0.64 | -0.7 |
4,540,450 | + | fimE | b4313 | 0.65 | +1.4 |
4,540,450 | + | fimE | b4313 | 0.65 | +2.1 |
4,540,450 | + | fimE | b4313 | 0.65 | -1.8 |
4,540,455 | + | fimE | b4313 | 0.66 | -1.0 |
4,540,455 | + | fimE | b4313 | 0.66 | +0.3 |
4,540,458 | - | fimE | b4313 | 0.67 | -0.9 |
4,540,458 | - | fimE | b4313 | 0.67 | -0.9 |
4,540,458 | - | fimE | b4313 | 0.67 | -0.6 |
4,540,461 | + | fimE | b4313 | 0.67 | +0.4 |
4,540,463 | + | fimE | b4313 | 0.68 | -1.5 |
4,540,465 | + | fimE | b4313 | 0.68 | +0.8 |
4,540,465 | + | fimE | b4313 | 0.68 | -1.8 |
4,540,465 | + | fimE | b4313 | 0.68 | -0.2 |
4,540,465 | + | fimE | b4313 | 0.68 | -0.2 |
4,540,469 | - | fimE | b4313 | 0.69 | +0.8 |
4,540,469 | - | fimE | b4313 | 0.69 | -0.7 |
4,540,470 | - | fimE | b4313 | 0.69 | +0.4 |
4,540,470 | - | fimE | b4313 | 0.69 | -1.2 |
4,540,470 | - | fimE | b4313 | 0.69 | -0.2 |
4,540,471 | - | fimE | b4313 | 0.69 | -0.2 |
4,540,471 | - | fimE | b4313 | 0.69 | -1.2 |
4,540,471 | - | fimE | b4313 | 0.69 | -1.0 |
4,540,471 | - | fimE | b4313 | 0.69 | -0.4 |
4,540,479 | + | fimE | b4313 | 0.70 | -0.6 |
4,540,482 | - | fimE | b4313 | 0.71 | -1.2 |
4,540,483 | - | fimE | b4313 | 0.71 | -2.8 |
4,540,487 | + | fimE | b4313 | 0.72 | -0.2 |
4,540,487 | + | fimE | b4313 | 0.72 | -0.2 |
4,540,495 | - | fimE | b4313 | 0.73 | -0.2 |
4,540,508 | + | fimE | b4313 | 0.75 | +0.8 |
4,540,513 | + | fimE | b4313 | 0.76 | -0.2 |
4,540,549 | - | fimE | b4313 | 0.82 | -1.1 |
4,540,562 | - | fimE | b4313 | 0.84 | -0.6 |
4,540,572 | - | fimE | b4313 | 0.86 | -1.0 |
4,540,574 | - | fimE | b4313 | 0.86 | +0.4 |
4,540,574 | - | fimE | b4313 | 0.86 | +0.6 |
4,540,578 | + | fimE | b4313 | 0.87 | +0.4 |
4,540,713 | + | -0.0 | |||
4,540,718 | - | +0.9 | |||
4,540,721 | - | -0.3 | |||
4,540,847 | - | -0.6 | |||
4,541,006 | + | +0.5 | |||
4,541,049 | + | +0.5 | |||
4,541,052 | - | +0.0 | |||
4,541,062 | + | -0.7 | |||
4,541,089 | - | +0.4 | |||
4,541,161 | - | +0.6 | |||
4,541,187 | + | +1.0 | |||
4,541,190 | + | +1.1 | |||
4,541,208 | + | fimA | b4314 | 0.13 | +0.9 |
4,541,208 | + | fimA | b4314 | 0.13 | -0.4 |
4,541,242 | - | fimA | b4314 | 0.19 | -0.7 |
4,541,314 | + | fimA | b4314 | 0.32 | +1.0 |
4,541,338 | + | fimA | b4314 | 0.36 | -0.7 |
4,541,340 | - | fimA | b4314 | 0.37 | -0.3 |
4,541,340 | - | fimA | b4314 | 0.37 | +0.5 |
4,541,468 | + | fimA | b4314 | 0.60 | -0.8 |
4,541,488 | - | fimA | b4314 | 0.64 | +0.6 |
4,541,488 | - | fimA | b4314 | 0.64 | -0.1 |
4,541,493 | - | fimA | b4314 | 0.65 | +2.1 |
4,541,493 | - | fimA | b4314 | 0.65 | +0.1 |
4,541,515 | - | fimA | b4314 | 0.69 | -0.2 |
4,541,596 | - | fimA | b4314 | 0.83 | +0.5 |
4,541,610 | - | fimA | b4314 | 0.86 | +0.2 |
4,541,628 | + | fimA | b4314 | 0.89 | -0.3 |
4,541,638 | + | -0.4 | |||
4,541,646 | + | +0.1 | |||
4,541,679 | + | -0.5 | |||
4,541,679 | + | +0.9 | |||
4,541,680 | - | +0.3 | |||
4,541,680 | - | -1.0 | |||
4,541,683 | + | +0.2 | |||
4,541,690 | + | -0.3 | |||
4,541,709 | + | +0.4 | |||
4,541,714 | + | +0.3 | |||
4,541,721 | + | +0.1 | |||
4,541,723 | + | -0.1 | |||
4,541,723 | + | +0.5 | |||
4,541,724 | + | -0.2 | |||
4,541,724 | + | +0.1 | |||
4,541,724 | + | +0.4 | |||
4,541,797 | - | -0.6 | |||
4,541,802 | - | -1.1 | |||
4,541,802 | - | -0.8 | |||
4,541,863 | + | fimI | b4315 | 0.21 | -1.1 |
4,541,882 | + | fimI | b4315 | 0.24 | -0.2 |
4,541,890 | - | fimI | b4315 | 0.26 | +1.6 |
4,541,917 | - | fimI | b4315 | 0.31 | +0.8 |
4,541,917 | - | fimI | b4315 | 0.31 | -0.2 |
4,541,920 | - | fimI | b4315 | 0.31 | +0.5 |
4,541,922 | - | fimI | b4315 | 0.32 | -2.0 |
4,541,922 | - | fimI | b4315 | 0.32 | +0.3 |
4,541,924 | + | fimI | b4315 | 0.32 | +0.0 |
4,541,932 | + | fimI | b4315 | 0.34 | +0.5 |
4,541,932 | + | fimI | b4315 | 0.34 | -0.3 |
4,541,960 | - | fimI | b4315 | 0.39 | +1.1 |
4,541,960 | - | fimI | b4315 | 0.39 | -1.0 |
4,541,965 | - | fimI | b4315 | 0.40 | +0.8 |
4,541,965 | - | fimI | b4315 | 0.40 | -1.2 |
4,541,967 | - | fimI | b4315 | 0.40 | +0.1 |
4,541,967 | - | fimI | b4315 | 0.40 | -0.2 |
4,541,996 | + | fimI | b4315 | 0.45 | -0.2 |
4,542,003 | + | fimI | b4315 | 0.47 | +0.7 |
4,542,014 | - | fimI | b4315 | 0.49 | -0.6 |
4,542,014 | - | fimI | b4315 | 0.49 | -0.2 |
4,542,019 | + | fimI | b4315 | 0.50 | +1.1 |
4,542,019 | + | fimI | b4315 | 0.50 | -0.7 |
4,542,033 | - | fimI | b4315 | 0.52 | +0.8 |
4,542,038 | - | fimI | b4315 | 0.53 | +0.8 |
4,542,038 | - | fimI | b4315 | 0.53 | -2.2 |
4,542,040 | + | fimI | b4315 | 0.54 | -0.4 |
4,542,075 | + | fimI | b4315 | 0.60 | +1.5 |
4,542,075 | + | fimI | b4315 | 0.60 | +0.6 |
4,542,075 | + | fimI | b4315 | 0.60 | -0.0 |
4,542,081 | - | fimI | b4315 | 0.61 | -1.2 |
4,542,081 | - | fimI | b4315 | 0.61 | -1.8 |
4,542,084 | + | fimI | b4315 | 0.62 | -0.1 |
4,542,114 | + | fimI | b4315 | 0.67 | -0.7 |
4,542,126 | + | fimI | b4315 | 0.69 | -1.0 |
4,542,176 | + | fimI | b4315 | 0.79 | +0.6 |
4,542,176 | + | fimI | b4315 | 0.79 | +1.1 |
4,542,176 | + | fimI | b4315 | 0.79 | -0.2 |
4,542,210 | + | fimI | b4315 | 0.85 | -0.4 |
4,542,210 | + | fimI | b4315 | 0.85 | +0.0 |
4,542,210 | + | fimI | b4315 | 0.85 | +0.5 |
4,542,215 | + | fimI | b4315 | 0.86 | +0.6 |
4,542,215 | + | fimI | b4315 | 0.86 | -0.2 |
4,542,220 | + | fimI | b4315 | 0.87 | -0.2 |
4,542,236 | + | fimI | b4315 | 0.90 | -0.2 |
4,542,236 | + | fimI | b4315 | 0.90 | +0.1 |
4,542,243 | - | -0.2 | |||
4,542,252 | + | -0.1 | |||
4,542,252 | + | -0.0 | |||
4,542,258 | + | +0.4 | |||
4,542,258 | + | +0.6 | |||
4,542,263 | + | -0.4 | |||
4,542,266 | + | +0.6 | |||
4,542,266 | + | +1.0 | |||
4,542,268 | + | +0.4 | |||
4,542,272 | + | +0.3 | |||
4,542,272 | + | -1.2 | |||
4,542,272 | + | +1.4 | |||
4,542,272 | + | -1.0 | |||
4,542,272 | + | -0.7 | |||
4,542,283 | + | -0.2 | |||
4,542,283 | + | -0.0 | |||
4,542,314 | + | +0.4 | |||
4,542,314 | + | +0.6 | |||
4,542,317 | + | +0.8 | |||
4,542,317 | + | -0.5 | |||
4,542,317 | + | +0.5 | |||
4,542,319 | + | -0.2 | |||
4,542,319 | + | +0.1 | |||
4,542,331 | + | -0.2 | |||
4,542,339 | - | -0.2 | |||
4,542,339 | - | -0.2 | |||
4,542,345 | + | -0.2 | |||
4,542,390 | + | -1.8 | |||
4,542,393 | + | +0.8 | |||
4,542,393 | + | -1.2 | |||
4,542,393 | + | -0.2 | |||
4,542,393 | - | -0.2 | |||
4,542,401 | - | fimC | b4316 | 0.10 | -0.2 |
4,542,401 | - | fimC | b4316 | 0.10 | -0.2 |
4,542,401 | - | fimC | b4316 | 0.10 | -0.2 |
4,542,406 | + | fimC | b4316 | 0.11 | +1.4 |
4,542,406 | + | fimC | b4316 | 0.11 | +0.6 |
4,542,409 | + | fimC | b4316 | 0.11 | -1.2 |
4,542,409 | + | fimC | b4316 | 0.11 | -0.2 |
4,542,414 | + | fimC | b4316 | 0.12 | -0.2 |
4,542,414 | + | fimC | b4316 | 0.12 | -0.4 |
4,542,424 | - | fimC | b4316 | 0.13 | -0.2 |
4,542,425 | - | fimC | b4316 | 0.13 | -0.2 |
4,542,427 | + | fimC | b4316 | 0.14 | -1.5 |
4,542,429 | + | fimC | b4316 | 0.14 | +0.0 |
4,542,429 | + | fimC | b4316 | 0.14 | -0.1 |
4,542,429 | + | fimC | b4316 | 0.14 | +0.2 |
4,542,430 | + | fimC | b4316 | 0.14 | +0.3 |
4,542,430 | + | fimC | b4316 | 0.14 | +0.4 |
4,542,431 | + | fimC | b4316 | 0.14 | +0.1 |
4,542,431 | + | fimC | b4316 | 0.14 | -0.1 |
4,542,431 | + | fimC | b4316 | 0.14 | +1.2 |
4,542,440 | + | fimC | b4316 | 0.16 | -1.8 |
4,542,440 | + | fimC | b4316 | 0.16 | -0.1 |
4,542,440 | + | fimC | b4316 | 0.16 | -0.5 |
4,542,440 | + | fimC | b4316 | 0.16 | -0.3 |
4,542,440 | + | fimC | b4316 | 0.16 | +0.2 |
4,542,440 | + | fimC | b4316 | 0.16 | +0.6 |
4,542,440 | + | fimC | b4316 | 0.16 | -0.2 |
4,542,440 | + | fimC | b4316 | 0.16 | -0.6 |
4,542,440 | + | fimC | b4316 | 0.16 | -0.8 |
4,542,440 | + | fimC | b4316 | 0.16 | -2.4 |
4,542,441 | + | fimC | b4316 | 0.16 | +0.4 |
4,542,447 | + | fimC | b4316 | 0.17 | -1.2 |
4,542,559 | + | fimC | b4316 | 0.32 | -0.8 |
4,542,559 | + | fimC | b4316 | 0.32 | -1.2 |
4,542,588 | + | fimC | b4316 | 0.36 | -1.8 |
4,542,589 | + | fimC | b4316 | 0.36 | -0.2 |
4,542,590 | + | fimC | b4316 | 0.36 | -0.8 |
4,542,596 | + | fimC | b4316 | 0.37 | -1.2 |
Or see this region's nucleotide sequence