Strain Fitness in Escherichia coli BW25113 around b4306

Experiment: 1/2ON soft

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsgcX and yjhY are separated by 398 nucleotidesyjhY and yjhP are separated by 126 nucleotidesyjhP and yjhQ are separated by 55 nucleotidesyjhQ and yjhX are separated by 11 nucleotides b4305: sgcX - putative lyase/synthase (VIMSS), at 4,528,553 to 4,529,674 sgcX b4656: yjhY - no description, at 4,530,073 to 4,530,333 yjhY b4306: yjhP - KpLE2 phage-like element; predicted methyltransferase (NCBI), at 4,530,460 to 4,531,206 yjhP b4307: yjhQ - KpLE2 phage-like element; predicted acetyltransferase (NCBI), at 4,531,262 to 4,531,807 yjhQ b4566: yjhX - hypothetical protein (NCBI), at 4,531,819 to 4,532,076 yjhX Position (kb) 4530 4531 4532Strain fitness (log2 ratio) -2 -1 0 1 2at 4529.517 kb on - strand, within sgcXat 4529.517 kb on - strand, within sgcXat 4529.688 kb on - strandat 4529.688 kb on - strandat 4529.771 kb on + strandat 4529.806 kb on + strandat 4529.806 kb on + strandat 4529.838 kb on + strandat 4529.851 kb on + strandat 4529.851 kb on - strandat 4529.851 kb on - strandat 4529.895 kb on + strandat 4529.903 kb on + strandat 4529.903 kb on - strandat 4529.948 kb on + strandat 4529.963 kb on - strandat 4529.963 kb on - strandat 4530.060 kb on - strandat 4530.063 kb on + strandat 4530.071 kb on - strandat 4530.173 kb on + strand, within yjhYat 4530.226 kb on + strand, within yjhYat 4530.249 kb on - strand, within yjhYat 4530.249 kb on - strand, within yjhYat 4530.271 kb on + strand, within yjhYat 4530.273 kb on + strand, within yjhYat 4530.306 kb on + strand, within yjhYat 4530.306 kb on + strand, within yjhYat 4530.331 kb on + strandat 4530.341 kb on + strandat 4530.342 kb on + strandat 4530.482 kb on - strandat 4530.482 kb on - strandat 4530.553 kb on - strand, within yjhPat 4530.617 kb on + strand, within yjhPat 4530.644 kb on - strand, within yjhPat 4530.709 kb on + strand, within yjhPat 4530.773 kb on - strand, within yjhPat 4530.786 kb on - strand, within yjhPat 4530.806 kb on - strand, within yjhPat 4530.841 kb on - strand, within yjhPat 4530.977 kb on + strand, within yjhPat 4531.045 kb on - strand, within yjhPat 4531.057 kb on - strand, within yjhPat 4531.128 kb on + strand, within yjhPat 4531.128 kb on + strand, within yjhPat 4531.128 kb on - strand, within yjhPat 4531.152 kb on + strandat 4531.173 kb on - strandat 4531.196 kb on - strandat 4531.196 kb on - strandat 4531.265 kb on + strandat 4531.265 kb on + strandat 4531.288 kb on + strandat 4531.300 kb on + strandat 4531.317 kb on + strand, within yjhQat 4531.322 kb on + strand, within yjhQat 4531.356 kb on + strand, within yjhQat 4531.366 kb on + strand, within yjhQat 4531.366 kb on + strand, within yjhQat 4531.384 kb on - strand, within yjhQat 4531.385 kb on - strand, within yjhQat 4531.414 kb on + strand, within yjhQat 4531.414 kb on + strand, within yjhQat 4531.433 kb on + strand, within yjhQat 4531.433 kb on + strand, within yjhQat 4531.433 kb on - strand, within yjhQat 4531.487 kb on - strand, within yjhQat 4531.487 kb on - strand, within yjhQat 4531.487 kb on - strand, within yjhQat 4531.487 kb on - strand, within yjhQat 4531.492 kb on - strand, within yjhQat 4531.492 kb on - strand, within yjhQat 4531.512 kb on - strand, within yjhQat 4531.528 kb on + strand, within yjhQat 4531.558 kb on + strand, within yjhQat 4531.572 kb on + strand, within yjhQat 4531.687 kb on + strand, within yjhQat 4531.702 kb on + strand, within yjhQat 4531.754 kb on - strandat 4531.754 kb on - strandat 4531.755 kb on + strandat 4531.755 kb on + strandat 4531.801 kb on - strandat 4531.811 kb on - strandat 4531.871 kb on + strand, within yjhXat 4531.881 kb on + strand, within yjhXat 4531.940 kb on + strand, within yjhXat 4531.956 kb on + strand, within yjhXat 4531.956 kb on + strand, within yjhXat 4531.959 kb on + strand, within yjhXat 4531.959 kb on + strand, within yjhXat 4531.967 kb on - strand, within yjhXat 4531.967 kb on - strand, within yjhXat 4532.029 kb on - strand, within yjhXat 4532.029 kb on - strand, within yjhXat 4532.086 kb on + strandat 4532.089 kb on + strandat 4532.110 kb on + strandat 4532.118 kb on - strandat 4532.123 kb on - strandat 4532.123 kb on - strandat 4532.131 kb on - strandat 4532.161 kb on - strandat 4532.195 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1/2ON soft
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4,529,517 - sgcX b4305 0.86 -0.4
4,529,517 - sgcX b4305 0.86 +1.3
4,529,688 - +1.0
4,529,688 - -0.2
4,529,771 + -0.0
4,529,806 + -0.7
4,529,806 + +0.7
4,529,838 + -0.0
4,529,851 + -0.0
4,529,851 - +1.2
4,529,851 - +1.7
4,529,895 + +0.1
4,529,903 + -1.4
4,529,903 - +0.5
4,529,948 + +0.5
4,529,963 - +0.9
4,529,963 - +0.1
4,530,060 - +0.9
4,530,063 + -0.1
4,530,071 - +0.4
4,530,173 + yjhY b4656 0.38 +0.4
4,530,226 + yjhY b4656 0.59 +0.1
4,530,249 - yjhY b4656 0.67 -0.6
4,530,249 - yjhY b4656 0.67 +0.5
4,530,271 + yjhY b4656 0.76 +0.3
4,530,273 + yjhY b4656 0.77 -0.6
4,530,306 + yjhY b4656 0.89 -0.2
4,530,306 + yjhY b4656 0.89 -0.2
4,530,331 + -0.2
4,530,341 + +0.3
4,530,342 + -0.1
4,530,482 - +0.8
4,530,482 - +2.4
4,530,553 - yjhP b4306 0.12 +0.0
4,530,617 + yjhP b4306 0.21 -0.0
4,530,644 - yjhP b4306 0.25 +0.0
4,530,709 + yjhP b4306 0.33 -1.9
4,530,773 - yjhP b4306 0.42 -0.4
4,530,786 - yjhP b4306 0.44 +1.4
4,530,806 - yjhP b4306 0.46 +0.4
4,530,841 - yjhP b4306 0.51 -0.3
4,530,977 + yjhP b4306 0.69 -0.2
4,531,045 - yjhP b4306 0.78 +0.2
4,531,057 - yjhP b4306 0.80 -0.9
4,531,128 + yjhP b4306 0.89 -0.4
4,531,128 + yjhP b4306 0.89 +0.7
4,531,128 - yjhP b4306 0.89 +0.8
4,531,152 + -0.1
4,531,173 - -0.3
4,531,196 - -0.1
4,531,196 - -0.3
4,531,265 + -0.1
4,531,265 + +0.8
4,531,288 + -0.0
4,531,300 + -0.4
4,531,317 + yjhQ b4307 0.10 +0.2
4,531,322 + yjhQ b4307 0.11 +2.0
4,531,356 + yjhQ b4307 0.17 -0.4
4,531,366 + yjhQ b4307 0.19 -0.5
4,531,366 + yjhQ b4307 0.19 +0.2
4,531,384 - yjhQ b4307 0.22 -0.6
4,531,385 - yjhQ b4307 0.23 +0.6
4,531,414 + yjhQ b4307 0.28 +1.6
4,531,414 + yjhQ b4307 0.28 +0.3
4,531,433 + yjhQ b4307 0.31 +0.2
4,531,433 + yjhQ b4307 0.31 +1.0
4,531,433 - yjhQ b4307 0.31 +0.1
4,531,487 - yjhQ b4307 0.41 +0.6
4,531,487 - yjhQ b4307 0.41 +0.6
4,531,487 - yjhQ b4307 0.41 +0.8
4,531,487 - yjhQ b4307 0.41 +0.0
4,531,492 - yjhQ b4307 0.42 +0.4
4,531,492 - yjhQ b4307 0.42 +0.2
4,531,512 - yjhQ b4307 0.46 -0.1
4,531,528 + yjhQ b4307 0.49 -0.2
4,531,558 + yjhQ b4307 0.54 +0.7
4,531,572 + yjhQ b4307 0.57 -0.1
4,531,687 + yjhQ b4307 0.78 -0.2
4,531,702 + yjhQ b4307 0.81 +0.4
4,531,754 - -0.2
4,531,754 - +0.2
4,531,755 + -0.5
4,531,755 + +0.0
4,531,801 - -0.2
4,531,811 - +0.6
4,531,871 + yjhX b4566 0.20 +0.2
4,531,881 + yjhX b4566 0.24 +0.1
4,531,940 + yjhX b4566 0.47 +0.4
4,531,956 + yjhX b4566 0.53 +0.7
4,531,956 + yjhX b4566 0.53 -0.2
4,531,959 + yjhX b4566 0.54 +0.5
4,531,959 + yjhX b4566 0.54 -1.2
4,531,967 - yjhX b4566 0.57 -1.8
4,531,967 - yjhX b4566 0.57 -0.2
4,532,029 - yjhX b4566 0.81 +1.2
4,532,029 - yjhX b4566 0.81 -0.1
4,532,086 + +0.7
4,532,089 + +0.2
4,532,110 + +0.0
4,532,118 - -0.2
4,532,123 - +0.0
4,532,123 - +0.5
4,532,131 - +0.0
4,532,161 - +0.7
4,532,195 + +0.4

Or see this region's nucleotide sequence