Strain Fitness in Escherichia coli BW25113 around b4255
Experiment: 1/2ON soft
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 1/2ON soft |
---|---|---|---|---|---|
remove | |||||
4,475,545 | - | argI | b4254 | 0.21 | +1.0 |
4,475,567 | - | argI | b4254 | 0.24 | -0.3 |
4,475,632 | + | argI | b4254 | 0.30 | -0.5 |
4,475,670 | - | argI | b4254 | 0.34 | -1.2 |
4,475,716 | + | argI | b4254 | 0.38 | -0.4 |
4,475,840 | - | argI | b4254 | 0.51 | +0.5 |
4,475,850 | + | argI | b4254 | 0.52 | -0.7 |
4,475,850 | + | argI | b4254 | 0.52 | +0.3 |
4,475,911 | + | argI | b4254 | 0.58 | +0.4 |
4,475,911 | + | argI | b4254 | 0.58 | -1.6 |
4,475,963 | - | argI | b4254 | 0.63 | -0.4 |
4,476,025 | - | argI | b4254 | 0.69 | +0.5 |
4,476,061 | + | argI | b4254 | 0.73 | -0.2 |
4,476,061 | + | argI | b4254 | 0.73 | +1.0 |
4,476,069 | - | argI | b4254 | 0.74 | +1.9 |
4,476,069 | - | argI | b4254 | 0.74 | +0.6 |
4,476,104 | + | argI | b4254 | 0.77 | +1.0 |
4,476,104 | + | argI | b4254 | 0.77 | -0.8 |
4,476,142 | + | argI | b4254 | 0.81 | +0.7 |
4,476,165 | - | argI | b4254 | 0.83 | +1.3 |
4,476,272 | + | -0.1 | |||
4,476,272 | + | -0.7 | |||
4,476,330 | + | -0.2 | |||
4,476,339 | - | -1.4 | |||
4,476,442 | + | +0.7 | |||
4,476,466 | - | +1.2 | |||
4,476,585 | + | yjgD | b4255 | 0.21 | -1.2 |
4,476,588 | + | yjgD | b4255 | 0.22 | -0.0 |
4,476,588 | + | yjgD | b4255 | 0.22 | -0.1 |
4,476,588 | + | yjgD | b4255 | 0.22 | -0.9 |
4,476,663 | + | yjgD | b4255 | 0.40 | +0.2 |
4,476,673 | - | yjgD | b4255 | 0.42 | -0.3 |
4,476,680 | + | yjgD | b4255 | 0.44 | -0.0 |
4,476,680 | + | yjgD | b4255 | 0.44 | +0.8 |
4,476,741 | - | yjgD | b4255 | 0.59 | +0.1 |
4,476,822 | - | yjgD | b4255 | 0.78 | -0.2 |
4,476,930 | + | +0.8 | |||
4,476,969 | + | -0.2 | |||
4,477,018 | + | +0.2 | |||
4,477,042 | - | +0.5 | |||
4,477,072 | + | +2.4 | |||
4,477,072 | + | -0.2 | |||
4,477,090 | - | -0.4 | |||
4,477,090 | - | -0.8 | |||
4,477,108 | - | yjgM | b4256 | 0.10 | -0.2 |
4,477,108 | - | yjgM | b4256 | 0.10 | +0.1 |
4,477,119 | + | yjgM | b4256 | 0.12 | +0.4 |
4,477,119 | + | yjgM | b4256 | 0.12 | +0.1 |
4,477,130 | + | yjgM | b4256 | 0.14 | +0.3 |
4,477,130 | + | yjgM | b4256 | 0.14 | -0.7 |
4,477,184 | + | yjgM | b4256 | 0.25 | -0.1 |
4,477,192 | + | yjgM | b4256 | 0.27 | +0.1 |
4,477,202 | + | yjgM | b4256 | 0.29 | +0.9 |
4,477,202 | - | yjgM | b4256 | 0.29 | -0.3 |
4,477,213 | + | yjgM | b4256 | 0.31 | -1.0 |
4,477,213 | - | yjgM | b4256 | 0.31 | -0.2 |
4,477,219 | + | yjgM | b4256 | 0.32 | -0.5 |
4,477,310 | - | yjgM | b4256 | 0.50 | -0.3 |
4,477,319 | + | yjgM | b4256 | 0.52 | +1.8 |
4,477,331 | + | yjgM | b4256 | 0.54 | -1.6 |
4,477,339 | - | yjgM | b4256 | 0.56 | +0.1 |
4,477,339 | - | yjgM | b4256 | 0.56 | +0.2 |
4,477,340 | + | yjgM | b4256 | 0.56 | +0.2 |
4,477,348 | - | yjgM | b4256 | 0.58 | -0.2 |
4,477,350 | + | yjgM | b4256 | 0.58 | +1.2 |
4,477,358 | - | yjgM | b4256 | 0.60 | +0.7 |
4,477,358 | - | yjgM | b4256 | 0.60 | +0.2 |
4,477,358 | - | yjgM | b4256 | 0.60 | -0.6 |
4,477,358 | - | yjgM | b4256 | 0.60 | +0.4 |
4,477,363 | - | yjgM | b4256 | 0.61 | +0.3 |
4,477,367 | - | yjgM | b4256 | 0.62 | +0.4 |
4,477,374 | + | yjgM | b4256 | 0.63 | +0.6 |
4,477,378 | - | yjgM | b4256 | 0.64 | +1.0 |
4,477,379 | - | yjgM | b4256 | 0.64 | -0.1 |
4,477,385 | - | yjgM | b4256 | 0.65 | -1.1 |
4,477,400 | + | yjgM | b4256 | 0.68 | +1.3 |
4,477,406 | - | yjgM | b4256 | 0.69 | -0.5 |
4,477,406 | - | yjgM | b4256 | 0.69 | +0.5 |
4,477,408 | - | yjgM | b4256 | 0.70 | -0.6 |
4,477,413 | + | yjgM | b4256 | 0.71 | +0.7 |
4,477,428 | + | yjgM | b4256 | 0.74 | -0.2 |
4,477,428 | + | yjgM | b4256 | 0.74 | +0.9 |
4,477,436 | + | yjgM | b4256 | 0.75 | -0.2 |
4,477,436 | + | yjgM | b4256 | 0.75 | +0.1 |
4,477,441 | + | yjgM | b4256 | 0.76 | -0.3 |
4,477,444 | - | yjgM | b4256 | 0.77 | -0.3 |
4,477,444 | - | yjgM | b4256 | 0.77 | -0.1 |
4,477,444 | - | yjgM | b4256 | 0.77 | +0.8 |
4,477,444 | - | yjgM | b4256 | 0.77 | +0.2 |
4,477,444 | - | yjgM | b4256 | 0.77 | -0.2 |
4,477,476 | + | yjgM | b4256 | 0.83 | -2.0 |
4,477,492 | + | yjgM | b4256 | 0.86 | +0.3 |
4,477,497 | + | yjgM | b4256 | 0.87 | -0.4 |
4,477,498 | + | yjgM | b4256 | 0.88 | +0.8 |
4,477,500 | + | yjgM | b4256 | 0.88 | +1.1 |
4,477,500 | + | yjgM | b4256 | 0.88 | +0.8 |
4,477,505 | + | yjgM | b4256 | 0.89 | +1.6 |
4,477,518 | - | -0.6 | |||
4,477,521 | + | -1.8 | |||
4,477,528 | + | -0.5 | |||
4,477,530 | + | -0.6 | |||
4,477,556 | + | -1.5 | |||
4,477,597 | + | +2.1 | |||
4,477,612 | + | -1.8 | |||
4,477,612 | + | -1.2 | |||
4,477,612 | + | -2.4 | |||
4,477,612 | + | -1.8 | |||
4,477,615 | - | -2.6 | |||
4,477,620 | - | -1.8 | |||
4,477,658 | + | -2.2 | |||
4,477,658 | + | +0.6 | |||
4,477,666 | - | -0.2 | |||
4,477,673 | + | -0.2 | |||
4,477,673 | + | -1.2 | |||
4,477,675 | + | -0.2 | |||
4,477,677 | + | -1.8 | |||
4,477,693 | + | -1.2 | |||
4,477,693 | + | +0.8 | |||
4,477,707 | + | -0.2 | |||
4,477,709 | + | -0.2 |
Or see this region's nucleotide sequence