Strain Fitness in Escherichia coli BW25113 around b2445

Experiment: 1/2ON soft

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyffL and yffM are separated by 469 nucleotidesyffM and yffN are separated by 11 nucleotidesyffN and yffO are separated by 117 nucleotidesyffO and yffP overlap by 4 nucleotides b2443: yffL - CPZ-55 prophage; predicted protein (NCBI), at 2,558,279 to 2,558,920 yffL b2444: yffM - CPZ-55 prophage; predicted protein (NCBI), at 2,559,390 to 2,559,635 yffM b2445: yffN - CPZ-55 prophage; predicted protein (RefSeq), at 2,559,647 to 2,560,015 yffN b2446: yffO - CPZ-55 prophage; predicted protein (NCBI), at 2,560,133 to 2,560,549 yffO b2447: yffP - CPZ-55 prophage; predicted protein (NCBI), at 2,560,546 to 2,561,139 yffP Position (kb) 2559 2560 2561Strain fitness (log2 ratio) -1 0 1at 2558.678 kb on + strand, within yffLat 2558.734 kb on + strand, within yffLat 2558.749 kb on - strand, within yffLat 2558.754 kb on - strand, within yffLat 2558.812 kb on + strand, within yffLat 2558.941 kb on - strandat 2559.256 kb on + strandat 2559.410 kb on - strandat 2559.410 kb on - strandat 2559.536 kb on - strand, within yffMat 2559.536 kb on - strand, within yffMat 2559.699 kb on + strand, within yffNat 2559.794 kb on - strand, within yffNat 2559.794 kb on - strand, within yffNat 2559.897 kb on + strand, within yffNat 2559.897 kb on + strand, within yffNat 2559.915 kb on - strand, within yffNat 2559.941 kb on - strand, within yffNat 2560.369 kb on - strand, within yffOat 2560.487 kb on + strand, within yffOat 2560.549 kb on + strandat 2560.616 kb on - strand, within yffPat 2560.683 kb on + strand, within yffPat 2560.683 kb on + strand, within yffPat 2560.876 kb on - strand, within yffPat 2560.889 kb on - strand, within yffP

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Per-strain Table

Position Strand Gene LocusTag Fraction 1/2ON soft
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2,558,678 + yffL b2443 0.62 -0.7
2,558,734 + yffL b2443 0.71 +0.7
2,558,749 - yffL b2443 0.73 -0.1
2,558,754 - yffL b2443 0.74 -0.1
2,558,812 + yffL b2443 0.83 +0.3
2,558,941 - -1.1
2,559,256 + +0.0
2,559,410 - +0.0
2,559,410 - +0.1
2,559,536 - yffM b2444 0.59 -1.5
2,559,536 - yffM b2444 0.59 +0.3
2,559,699 + yffN b2445 0.14 -1.3
2,559,794 - yffN b2445 0.40 -0.4
2,559,794 - yffN b2445 0.40 -1.2
2,559,897 + yffN b2445 0.68 -1.5
2,559,897 + yffN b2445 0.68 -1.0
2,559,915 - yffN b2445 0.73 -0.1
2,559,941 - yffN b2445 0.80 +0.9
2,560,369 - yffO b2446 0.57 +0.3
2,560,487 + yffO b2446 0.85 +0.4
2,560,549 + -0.1
2,560,616 - yffP b2447 0.12 +0.1
2,560,683 + yffP b2447 0.23 -0.4
2,560,683 + yffP b2447 0.23 +0.2
2,560,876 - yffP b2447 0.56 -0.8
2,560,889 - yffP b2447 0.58 +0.0

Or see this region's nucleotide sequence