Experiment: P. simiae Grant Run MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04405 and PS417_04410 are separated by 25 nucleotides PS417_04410 and PS417_04415 are separated by 8 nucleotides PS417_04415 and PS417_04420 are separated by 128 nucleotides
PS417_04405: PS417_04405 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 979,775 to 981,040
_04405
PS417_04410: PS417_04410 - hypothetical protein, at 981,066 to 981,245
_04410
PS417_04415: PS417_04415 - ATP phosphoribosyltransferase (EC 2.4.2.17) <small>(from data)</small>, at 981,254 to 981,889
_04415
PS417_04420: PS417_04420 - histidinol dehydrogenase, at 982,018 to 983,340
_04420
Position (kb) 981
982 Strain fitness (log2 ratio) -2
-1
0
1
2 at 981.056 kb on - strand at 981.056 kb on - strand at 981.149 kb on + strand, within PS417_04410 at 981.150 kb on - strand, within PS417_04410 at 981.182 kb on - strand, within PS417_04410 at 981.227 kb on + strand, within PS417_04410 at 981.425 kb on + strand, within PS417_04415 at 981.425 kb on + strand, within PS417_04415 at 981.464 kb on - strand, within PS417_04415 at 981.483 kb on - strand, within PS417_04415 at 981.500 kb on + strand, within PS417_04415 at 981.501 kb on - strand, within PS417_04415 at 981.501 kb on - strand, within PS417_04415 at 981.501 kb on - strand, within PS417_04415 at 981.623 kb on + strand, within PS417_04415 at 981.624 kb on - strand, within PS417_04415 at 981.650 kb on - strand, within PS417_04415 at 981.972 kb on - strand at 982.002 kb on + strand at 982.327 kb on + strand, within PS417_04420 at 982.360 kb on + strand, within PS417_04420 at 982.360 kb on + strand, within PS417_04420 at 982.423 kb on + strand, within PS417_04420 at 982.423 kb on + strand, within PS417_04420 at 982.628 kb on - strand, within PS417_04420 at 982.681 kb on + strand, within PS417_04420 at 982.681 kb on + strand, within PS417_04420 at 982.681 kb on + strand, within PS417_04420 at 982.682 kb on - strand, within PS417_04420 at 982.682 kb on - strand, within PS417_04420
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae Grant Run MOI 0.1 remove 981,056 - -2.4 981,056 - +0.2 981,149 + PS417_04410 0.46 +0.5 981,150 - PS417_04410 0.47 -1.3 981,182 - PS417_04410 0.64 +1.5 981,227 + PS417_04410 0.89 +2.2 981,425 + PS417_04415 0.27 -1.2 981,425 + PS417_04415 0.27 -0.8 981,464 - PS417_04415 0.33 -1.7 981,483 - PS417_04415 0.36 -0.4 981,500 + PS417_04415 0.39 -0.5 981,501 - PS417_04415 0.39 -1.4 981,501 - PS417_04415 0.39 -0.7 981,501 - PS417_04415 0.39 -0.8 981,623 + PS417_04415 0.58 -0.4 981,624 - PS417_04415 0.58 -0.4 981,650 - PS417_04415 0.62 -0.8 981,972 - +0.4 982,002 + +0.1 982,327 + PS417_04420 0.23 +1.3 982,360 + PS417_04420 0.26 -1.3 982,360 + PS417_04420 0.26 -1.4 982,423 + PS417_04420 0.31 +0.2 982,423 + PS417_04420 0.31 -0.2 982,628 - PS417_04420 0.46 -0.7 982,681 + PS417_04420 0.50 +0.3 982,681 + PS417_04420 0.50 +0.1 982,681 + PS417_04420 0.50 -0.0 982,682 - PS417_04420 0.50 -0.5 982,682 - PS417_04420 0.50 +0.7
Or see this region's nucleotide sequence