Strain Fitness in Pseudomonas simiae WCS417 around PS417_03685

Experiment: P. simiae Grant Run MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03675 and PS417_03680 are separated by 111 nucleotidesPS417_03680 and PS417_03685 overlap by 4 nucleotidesPS417_03685 and PS417_03690 are separated by 209 nucleotides PS417_03675: PS417_03675 - hypothetical protein, at 831,954 to 832,913 _03675 PS417_03680: PS417_03680 - hypothetical protein, at 833,025 to 833,240 _03680 PS417_03685: PS417_03685 - FAD-dependent oxidoreductase, at 833,237 to 834,223 _03685 PS417_03690: PS417_03690 - NAD-dependent dehydratase, at 834,433 to 835,332 _03690 Position (kb) 833 834 835Strain fitness (log2 ratio) -2 -1 0 1 2at 832.333 kb on + strand, within PS417_03675at 832.333 kb on + strand, within PS417_03675at 832.333 kb on + strand, within PS417_03675at 832.334 kb on - strand, within PS417_03675at 832.340 kb on - strand, within PS417_03675at 832.513 kb on + strand, within PS417_03675at 832.514 kb on - strand, within PS417_03675at 832.514 kb on - strand, within PS417_03675at 832.559 kb on - strand, within PS417_03675at 832.652 kb on - strand, within PS417_03675at 832.913 kb on + strandat 832.974 kb on + strandat 832.974 kb on + strandat 833.332 kb on - strandat 833.968 kb on - strand, within PS417_03685at 834.055 kb on - strand, within PS417_03685at 834.238 kb on + strandat 834.248 kb on - strandat 834.268 kb on + strandat 834.269 kb on - strandat 834.269 kb on - strandat 834.295 kb on - strandat 834.335 kb on - strandat 834.385 kb on - strandat 834.386 kb on + strandat 834.392 kb on - strandat 834.416 kb on + strandat 834.567 kb on - strand, within PS417_03690at 835.025 kb on + strand, within PS417_03690at 835.026 kb on - strand, within PS417_03690at 835.029 kb on + strand, within PS417_03690at 835.029 kb on + strand, within PS417_03690at 835.029 kb on + strand, within PS417_03690at 835.029 kb on + strand, within PS417_03690at 835.029 kb on + strand, within PS417_03690at 835.029 kb on + strand, within PS417_03690at 835.029 kb on + strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.090 kb on + strand, within PS417_03690at 835.091 kb on - strand, within PS417_03690at 835.091 kb on - strand, within PS417_03690at 835.091 kb on - strand, within PS417_03690at 835.091 kb on - strand, within PS417_03690at 835.092 kb on + strand, within PS417_03690at 835.092 kb on + strand, within PS417_03690at 835.093 kb on - strand, within PS417_03690at 835.093 kb on - strand, within PS417_03690

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Per-strain Table

Position Strand Gene LocusTag Fraction P. simiae Grant Run MOI 0.1
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832,333 + PS417_03675 0.39 -0.6
832,333 + PS417_03675 0.39 +0.3
832,333 + PS417_03675 0.39 +0.5
832,334 - PS417_03675 0.40 +0.3
832,340 - PS417_03675 0.40 +1.5
832,513 + PS417_03675 0.58 -0.4
832,514 - PS417_03675 0.58 +1.1
832,514 - PS417_03675 0.58 -1.4
832,559 - PS417_03675 0.63 -0.1
832,652 - PS417_03675 0.73 +1.0
832,913 + +0.4
832,974 + -1.5
832,974 + -1.5
833,332 - +1.7
833,968 - PS417_03685 0.74 -0.5
834,055 - PS417_03685 0.83 -1.2
834,238 + +0.1
834,248 - +0.1
834,268 + -0.9
834,269 - +1.7
834,269 - -0.3
834,295 - -0.1
834,335 - +1.0
834,385 - +0.9
834,386 + -1.0
834,392 - +1.2
834,416 + -1.3
834,567 - PS417_03690 0.15 -0.7
835,025 + PS417_03690 0.66 -0.9
835,026 - PS417_03690 0.66 -2.0
835,029 + PS417_03690 0.66 -0.6
835,029 + PS417_03690 0.66 +0.2
835,029 + PS417_03690 0.66 -0.1
835,029 + PS417_03690 0.66 -1.2
835,029 + PS417_03690 0.66 +0.7
835,029 + PS417_03690 0.66 +0.1
835,029 + PS417_03690 0.66 +2.1
835,030 - PS417_03690 0.66 -0.3
835,030 - PS417_03690 0.66 -0.3
835,030 - PS417_03690 0.66 -0.3
835,030 - PS417_03690 0.66 +0.0
835,030 - PS417_03690 0.66 +0.2
835,030 - PS417_03690 0.66 -0.2
835,030 - PS417_03690 0.66 +1.4
835,030 - PS417_03690 0.66 -0.2
835,030 - PS417_03690 0.66 +0.7
835,030 - PS417_03690 0.66 -0.8
835,090 + PS417_03690 0.73 -0.1
835,091 - PS417_03690 0.73 -0.6
835,091 - PS417_03690 0.73 +0.7
835,091 - PS417_03690 0.73 -0.5
835,091 - PS417_03690 0.73 -0.2
835,092 + PS417_03690 0.73 -0.2
835,092 + PS417_03690 0.73 -0.3
835,093 - PS417_03690 0.73 -0.8
835,093 - PS417_03690 0.73 -1.2

Or see this region's nucleotide sequence