Strain Fitness in Pseudomonas simiae WCS417 around PS417_25085

Experiment: P. simiae Grant Run MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25080 and PS417_25085 are separated by 68 nucleotidesPS417_25085 and PS417_25090 overlap by 4 nucleotides PS417_25080: PS417_25080 - hypothetical protein, at 5,438,296 to 5,439,393 _25080 PS417_25085: PS417_25085 - hypothetical protein, at 5,439,462 to 5,440,670 _25085 PS417_25090: PS417_25090 - hypothetical protein, at 5,440,667 to 5,441,941 _25090 Position (kb) 5439 5440 5441Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5438.492 kb on + strand, within PS417_25080at 5438.492 kb on + strand, within PS417_25080at 5438.492 kb on + strand, within PS417_25080at 5438.492 kb on + strand, within PS417_25080at 5438.493 kb on - strand, within PS417_25080at 5438.573 kb on - strand, within PS417_25080at 5438.573 kb on - strand, within PS417_25080at 5438.710 kb on - strand, within PS417_25080at 5438.734 kb on + strand, within PS417_25080at 5438.782 kb on + strand, within PS417_25080at 5438.788 kb on + strand, within PS417_25080at 5438.788 kb on + strand, within PS417_25080at 5438.788 kb on + strand, within PS417_25080at 5438.789 kb on - strand, within PS417_25080at 5438.790 kb on + strand, within PS417_25080at 5438.798 kb on - strand, within PS417_25080at 5438.901 kb on - strand, within PS417_25080at 5439.022 kb on + strand, within PS417_25080at 5439.023 kb on - strand, within PS417_25080at 5439.249 kb on - strand, within PS417_25080at 5439.257 kb on + strand, within PS417_25080at 5439.258 kb on - strand, within PS417_25080at 5439.298 kb on - strandat 5439.298 kb on - strandat 5439.356 kb on + strandat 5439.357 kb on - strandat 5439.357 kb on - strandat 5439.488 kb on - strandat 5439.657 kb on - strand, within PS417_25085at 5439.667 kb on + strand, within PS417_25085at 5439.667 kb on + strand, within PS417_25085at 5439.667 kb on + strandat 5439.668 kb on - strand, within PS417_25085at 5439.668 kb on - strand, within PS417_25085at 5439.668 kb on - strand, within PS417_25085at 5439.668 kb on - strand, within PS417_25085at 5439.668 kb on - strand, within PS417_25085at 5439.718 kb on + strand, within PS417_25085at 5439.719 kb on - strand, within PS417_25085at 5439.778 kb on + strand, within PS417_25085at 5439.778 kb on + strand, within PS417_25085at 5439.819 kb on + strand, within PS417_25085at 5439.819 kb on + strand, within PS417_25085at 5439.885 kb on + strand, within PS417_25085at 5439.937 kb on + strand, within PS417_25085at 5439.959 kb on + strand, within PS417_25085at 5439.960 kb on - strand, within PS417_25085at 5439.960 kb on - strand, within PS417_25085at 5439.960 kb on - strand, within PS417_25085at 5440.012 kb on + strand, within PS417_25085at 5440.106 kb on + strand, within PS417_25085at 5440.131 kb on + strand, within PS417_25085at 5440.132 kb on - strand, within PS417_25085at 5440.132 kb on - strand, within PS417_25085at 5440.132 kb on - strand, within PS417_25085at 5440.132 kb on - strand, within PS417_25085at 5440.205 kb on - strand, within PS417_25085at 5440.214 kb on - strand, within PS417_25085at 5440.229 kb on + strand, within PS417_25085at 5440.229 kb on + strand, within PS417_25085at 5440.377 kb on + strand, within PS417_25085at 5440.482 kb on + strand, within PS417_25085at 5440.482 kb on + strand, within PS417_25085at 5440.482 kb on + strand, within PS417_25085at 5440.513 kb on + strand, within PS417_25085at 5440.513 kb on + strand, within PS417_25085at 5440.513 kb on + strand, within PS417_25085at 5440.513 kb on + strand, within PS417_25085at 5440.514 kb on - strand, within PS417_25085at 5440.519 kb on + strand, within PS417_25085at 5440.519 kb on + strand, within PS417_25085at 5440.520 kb on - strand, within PS417_25085at 5440.609 kb on + strandat 5440.609 kb on + strandat 5440.610 kb on - strandat 5440.610 kb on - strandat 5440.610 kb on - strandat 5440.702 kb on - strandat 5440.794 kb on + strandat 5440.794 kb on + strandat 5440.794 kb on + strandat 5440.795 kb on - strand, within PS417_25090at 5440.795 kb on - strand, within PS417_25090at 5440.810 kb on + strand, within PS417_25090at 5440.811 kb on - strand, within PS417_25090at 5440.818 kb on + strand, within PS417_25090at 5440.908 kb on + strand, within PS417_25090at 5440.909 kb on - strand, within PS417_25090at 5440.962 kb on + strand, within PS417_25090at 5441.092 kb on + strand, within PS417_25090at 5441.092 kb on + strand, within PS417_25090at 5441.092 kb on + strand, within PS417_25090at 5441.092 kb on + strand, within PS417_25090at 5441.092 kb on + strand, within PS417_25090at 5441.093 kb on - strand, within PS417_25090at 5441.093 kb on - strand, within PS417_25090at 5441.093 kb on - strand, within PS417_25090at 5441.093 kb on - strand, within PS417_25090at 5441.093 kb on - strand, within PS417_25090at 5441.094 kb on + strand, within PS417_25090at 5441.095 kb on - strand, within PS417_25090at 5441.111 kb on - strand, within PS417_25090at 5441.128 kb on + strand, within PS417_25090at 5441.129 kb on - strand, within PS417_25090at 5441.145 kb on + strand, within PS417_25090at 5441.146 kb on - strand, within PS417_25090at 5441.190 kb on + strand, within PS417_25090at 5441.223 kb on + strand, within PS417_25090at 5441.223 kb on + strand, within PS417_25090at 5441.224 kb on - strand, within PS417_25090at 5441.330 kb on + strand, within PS417_25090at 5441.330 kb on + strand, within PS417_25090at 5441.331 kb on - strand, within PS417_25090at 5441.331 kb on - strand, within PS417_25090at 5441.331 kb on - strand, within PS417_25090at 5441.380 kb on + strand, within PS417_25090at 5441.385 kb on - strand, within PS417_25090at 5441.436 kb on + strand, within PS417_25090at 5441.436 kb on + strand, within PS417_25090at 5441.437 kb on - strand, within PS417_25090at 5441.437 kb on - strand, within PS417_25090at 5441.437 kb on - strand, within PS417_25090at 5441.437 kb on - strand, within PS417_25090at 5441.460 kb on + strand, within PS417_25090at 5441.460 kb on + strandat 5441.461 kb on - strand, within PS417_25090at 5441.461 kb on - strand, within PS417_25090at 5441.553 kb on + strand, within PS417_25090at 5441.553 kb on + strand, within PS417_25090at 5441.597 kb on + strand, within PS417_25090at 5441.598 kb on - strand, within PS417_25090at 5441.598 kb on - strand, within PS417_25090at 5441.601 kb on - strand, within PS417_25090at 5441.614 kb on + strand, within PS417_25090at 5441.614 kb on + strandat 5441.614 kb on + strand, within PS417_25090at 5441.614 kb on + strand, within PS417_25090at 5441.614 kb on + strand, within PS417_25090at 5441.614 kb on + strand, within PS417_25090at 5441.615 kb on - strand, within PS417_25090at 5441.615 kb on - strandat 5441.615 kb on - strand, within PS417_25090

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Per-strain Table

Position Strand Gene LocusTag Fraction P. simiae Grant Run MOI 0.1
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5,438,492 + PS417_25080 0.18 -0.8
5,438,492 + PS417_25080 0.18 +0.3
5,438,492 + PS417_25080 0.18 +0.5
5,438,492 + PS417_25080 0.18 -1.5
5,438,493 - PS417_25080 0.18 +0.8
5,438,573 - PS417_25080 0.25 +0.0
5,438,573 - PS417_25080 0.25 -0.5
5,438,710 - PS417_25080 0.38 -2.3
5,438,734 + PS417_25080 0.40 -0.5
5,438,782 + PS417_25080 0.44 -0.6
5,438,788 + PS417_25080 0.45 +2.4
5,438,788 + PS417_25080 0.45 +0.5
5,438,788 + PS417_25080 0.45 -0.3
5,438,789 - PS417_25080 0.45 +0.7
5,438,790 + PS417_25080 0.45 +0.1
5,438,798 - PS417_25080 0.46 -0.2
5,438,901 - PS417_25080 0.55 +1.2
5,439,022 + PS417_25080 0.66 +0.5
5,439,023 - PS417_25080 0.66 +0.4
5,439,249 - PS417_25080 0.87 -0.3
5,439,257 + PS417_25080 0.88 -0.5
5,439,258 - PS417_25080 0.88 -0.1
5,439,298 - -0.1
5,439,298 - +1.9
5,439,356 + +0.8
5,439,357 - +0.2
5,439,357 - +0.1
5,439,488 - -0.8
5,439,657 - PS417_25085 0.16 -1.6
5,439,667 + PS417_25085 0.17 +2.5
5,439,667 + PS417_25085 0.17 +0.6
5,439,667 + +0.7
5,439,668 - PS417_25085 0.17 -0.4
5,439,668 - PS417_25085 0.17 -1.5
5,439,668 - PS417_25085 0.17 +1.7
5,439,668 - PS417_25085 0.17 +1.0
5,439,668 - PS417_25085 0.17 +0.9
5,439,718 + PS417_25085 0.21 -0.4
5,439,719 - PS417_25085 0.21 -0.2
5,439,778 + PS417_25085 0.26 -0.2
5,439,778 + PS417_25085 0.26 -0.4
5,439,819 + PS417_25085 0.30 +0.4
5,439,819 + PS417_25085 0.30 +0.5
5,439,885 + PS417_25085 0.35 -0.6
5,439,937 + PS417_25085 0.39 +0.2
5,439,959 + PS417_25085 0.41 +0.5
5,439,960 - PS417_25085 0.41 -0.0
5,439,960 - PS417_25085 0.41 +0.0
5,439,960 - PS417_25085 0.41 +0.6
5,440,012 + PS417_25085 0.45 +1.0
5,440,106 + PS417_25085 0.53 +1.4
5,440,131 + PS417_25085 0.55 +0.2
5,440,132 - PS417_25085 0.55 +0.7
5,440,132 - PS417_25085 0.55 +0.6
5,440,132 - PS417_25085 0.55 -1.4
5,440,132 - PS417_25085 0.55 +0.2
5,440,205 - PS417_25085 0.61 -0.3
5,440,214 - PS417_25085 0.62 -0.4
5,440,229 + PS417_25085 0.63 +1.6
5,440,229 + PS417_25085 0.63 +0.0
5,440,377 + PS417_25085 0.76 -0.5
5,440,482 + PS417_25085 0.84 -0.2
5,440,482 + PS417_25085 0.84 -1.0
5,440,482 + PS417_25085 0.84 -1.8
5,440,513 + PS417_25085 0.87 +3.2
5,440,513 + PS417_25085 0.87 +0.3
5,440,513 + PS417_25085 0.87 +1.2
5,440,513 + PS417_25085 0.87 +0.1
5,440,514 - PS417_25085 0.87 +1.6
5,440,519 + PS417_25085 0.87 +0.2
5,440,519 + PS417_25085 0.87 +1.2
5,440,520 - PS417_25085 0.88 +0.2
5,440,609 + +1.0
5,440,609 + -0.0
5,440,610 - -1.7
5,440,610 - -1.9
5,440,610 - -0.9
5,440,702 - -0.3
5,440,794 + +1.6
5,440,794 + +0.1
5,440,794 + +0.2
5,440,795 - PS417_25090 0.10 -0.6
5,440,795 - PS417_25090 0.10 +0.8
5,440,810 + PS417_25090 0.11 -0.2
5,440,811 - PS417_25090 0.11 +1.0
5,440,818 + PS417_25090 0.12 +0.5
5,440,908 + PS417_25090 0.19 -0.4
5,440,909 - PS417_25090 0.19 -3.5
5,440,962 + PS417_25090 0.23 +4.0
5,441,092 + PS417_25090 0.33 +1.4
5,441,092 + PS417_25090 0.33 +0.4
5,441,092 + PS417_25090 0.33 -1.6
5,441,092 + PS417_25090 0.33 +0.4
5,441,092 + PS417_25090 0.33 +0.5
5,441,093 - PS417_25090 0.33 -0.1
5,441,093 - PS417_25090 0.33 -0.3
5,441,093 - PS417_25090 0.33 -1.5
5,441,093 - PS417_25090 0.33 +1.3
5,441,093 - PS417_25090 0.33 +0.1
5,441,094 + PS417_25090 0.33 +1.4
5,441,095 - PS417_25090 0.34 +1.6
5,441,111 - PS417_25090 0.35 +0.7
5,441,128 + PS417_25090 0.36 +0.1
5,441,129 - PS417_25090 0.36 +0.3
5,441,145 + PS417_25090 0.37 -0.5
5,441,146 - PS417_25090 0.38 -0.5
5,441,190 + PS417_25090 0.41 +0.0
5,441,223 + PS417_25090 0.44 -1.3
5,441,223 + PS417_25090 0.44 +0.0
5,441,224 - PS417_25090 0.44 +0.2
5,441,330 + PS417_25090 0.52 +0.0
5,441,330 + PS417_25090 0.52 +0.3
5,441,331 - PS417_25090 0.52 +1.2
5,441,331 - PS417_25090 0.52 -0.3
5,441,331 - PS417_25090 0.52 -1.3
5,441,380 + PS417_25090 0.56 -0.1
5,441,385 - PS417_25090 0.56 +0.4
5,441,436 + PS417_25090 0.60 -0.7
5,441,436 + PS417_25090 0.60 -0.9
5,441,437 - PS417_25090 0.60 -1.1
5,441,437 - PS417_25090 0.60 -1.8
5,441,437 - PS417_25090 0.60 -0.5
5,441,437 - PS417_25090 0.60 -2.5
5,441,460 + PS417_25090 0.62 +0.5
5,441,460 + -1.7
5,441,461 - PS417_25090 0.62 +0.6
5,441,461 - PS417_25090 0.62 +0.9
5,441,553 + PS417_25090 0.69 -1.9
5,441,553 + PS417_25090 0.69 +0.0
5,441,597 + PS417_25090 0.73 -0.2
5,441,598 - PS417_25090 0.73 -2.7
5,441,598 - PS417_25090 0.73 +0.4
5,441,601 - PS417_25090 0.73 -0.4
5,441,614 + PS417_25090 0.74 -0.0
5,441,614 + +2.1
5,441,614 + PS417_25090 0.74 +0.3
5,441,614 + PS417_25090 0.74 -0.7
5,441,614 + PS417_25090 0.74 -0.1
5,441,614 + PS417_25090 0.74 +0.9
5,441,615 - PS417_25090 0.74 -0.2
5,441,615 - -0.9
5,441,615 - PS417_25090 0.74 -0.7

Or see this region's nucleotide sequence