Experiment: P. simiae Grant Run MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02430 and PS417_02435 are separated by 166 nucleotides PS417_02435 and PS417_02440 are separated by 3 nucleotides
PS417_02430: PS417_02430 - histidine kinase, at 556,500 to 558,035
_02430
PS417_02435: PS417_02435 - flagellar motor protein MotA, at 558,202 to 559,053
_02435
PS417_02440: PS417_02440 - flagellar motor protein MotB, at 559,057 to 560,076
_02440
Position (kb) 558
559
560 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 557.885 kb on + strand at 557.961 kb on + strand at 557.961 kb on + strand at 557.962 kb on - strand at 557.962 kb on - strand at 558.110 kb on + strand at 558.111 kb on - strand at 558.136 kb on + strand at 558.136 kb on + strand at 558.137 kb on - strand at 558.137 kb on - strand at 558.156 kb on - strand at 558.164 kb on + strand at 558.164 kb on + strand at 558.164 kb on + strand at 558.165 kb on - strand at 558.165 kb on - strand at 558.190 kb on + strand at 558.190 kb on + strand at 558.190 kb on + strand at 558.190 kb on + strand at 558.190 kb on + strand at 558.191 kb on - strand at 558.191 kb on - strand at 558.191 kb on - strand at 558.201 kb on + strand at 558.201 kb on + strand at 558.202 kb on - strand at 558.208 kb on - strand at 558.254 kb on - strand at 558.271 kb on - strand at 558.422 kb on - strand, within PS417_02435 at 558.446 kb on - strand, within PS417_02435 at 558.571 kb on + strand, within PS417_02435 at 558.571 kb on + strand, within PS417_02435 at 558.571 kb on + strand, within PS417_02435 at 558.572 kb on - strand, within PS417_02435 at 558.583 kb on + strand, within PS417_02435 at 558.583 kb on + strand, within PS417_02435 at 558.712 kb on - strand, within PS417_02435 at 558.740 kb on + strand, within PS417_02435 at 558.914 kb on - strand, within PS417_02435 at 559.231 kb on + strand, within PS417_02440 at 559.232 kb on - strand, within PS417_02440 at 559.676 kb on - strand, within PS417_02440 at 559.968 kb on + strand, within PS417_02440 at 559.969 kb on - strand, within PS417_02440
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae Grant Run MOI 10 remove 557,885 + +1.7 557,961 + +1.5 557,961 + -0.7 557,962 - +0.6 557,962 - +1.4 558,110 + +0.9 558,111 - +1.8 558,136 + +0.9 558,136 + +0.7 558,137 - +2.8 558,137 - +1.9 558,156 - +0.1 558,164 + +1.7 558,164 + +0.8 558,164 + +2.5 558,165 - +1.8 558,165 - +2.4 558,190 + +1.1 558,190 + -1.0 558,190 + -1.1 558,190 + +0.3 558,190 + +0.0 558,191 - +1.9 558,191 - +2.5 558,191 - +1.8 558,201 + +2.3 558,201 + +1.6 558,202 - +2.2 558,208 - +2.0 558,254 - +1.8 558,271 - +1.2 558,422 - PS417_02435 0.26 +2.0 558,446 - PS417_02435 0.29 +1.8 558,571 + PS417_02435 0.43 +2.3 558,571 + PS417_02435 0.43 +1.7 558,571 + PS417_02435 0.43 +3.4 558,572 - PS417_02435 0.43 +1.9 558,583 + PS417_02435 0.45 +1.4 558,583 + PS417_02435 0.45 +2.1 558,712 - PS417_02435 0.60 +2.0 558,740 + PS417_02435 0.63 +2.3 558,914 - PS417_02435 0.84 +3.4 559,231 + PS417_02440 0.17 +2.1 559,232 - PS417_02440 0.17 +2.0 559,676 - PS417_02440 0.61 +1.3 559,968 + PS417_02440 0.89 +4.0 559,969 - PS417_02440 0.89 -0.3
Or see this region's nucleotide sequence