Experiment: P. simiae Grant Run MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00510 and PS417_00515 are separated by 211 nucleotides PS417_00515 and PS417_00520 are separated by 68 nucleotides
PS417_00510: PS417_00510 - membrane protein, at 101,534 to 103,192
_00510
PS417_00515: PS417_00515 - membrane protein, at 103,404 to 104,171
_00515
PS417_00520: PS417_00520 - citrate transporter, at 104,240 to 105,547
_00520
Position (kb) 103
104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 102.614 kb on + strand, within PS417_00510 at 103.150 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.254 kb on - strand at 103.254 kb on - strand at 103.254 kb on - strand at 103.259 kb on + strand at 103.260 kb on - strand at 103.266 kb on + strand at 103.267 kb on - strand at 103.267 kb on - strand at 103.273 kb on + strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.307 kb on - strand at 103.307 kb on - strand at 103.307 kb on - strand at 103.310 kb on + strand at 103.310 kb on + strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.525 kb on + strand, within PS417_00515 at 103.525 kb on + strand, within PS417_00515 at 103.531 kb on + strand, within PS417_00515 at 103.708 kb on - strand, within PS417_00515 at 103.789 kb on + strand, within PS417_00515 at 103.789 kb on + strand, within PS417_00515 at 103.789 kb on + strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.855 kb on + strand, within PS417_00515 at 103.856 kb on - strand, within PS417_00515 at 103.856 kb on - strand, within PS417_00515 at 103.856 kb on - strand, within PS417_00515 at 104.037 kb on - strand, within PS417_00515 at 104.048 kb on + strand, within PS417_00515 at 104.048 kb on + strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.195 kb on - strand at 104.243 kb on + strand at 104.243 kb on + strand at 104.243 kb on + strand at 104.244 kb on - strand at 104.244 kb on - strand at 104.291 kb on + strand at 104.377 kb on - strand, within PS417_00520 at 104.500 kb on - strand, within PS417_00520 at 104.500 kb on - strand, within PS417_00520 at 104.656 kb on + strand, within PS417_00520 at 104.657 kb on - strand, within PS417_00520 at 104.691 kb on - strand, within PS417_00520 at 104.742 kb on + strand, within PS417_00520 at 104.964 kb on + strand, within PS417_00520
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae Grant Run MOI 10 remove 102,614 + PS417_00510 0.65 -0.4 103,150 + -0.2 103,253 + +1.1 103,253 + -0.4 103,253 + +0.2 103,253 + -0.9 103,253 + -0.3 103,254 - +0.6 103,254 - +0.7 103,254 - -0.3 103,259 + +0.1 103,260 - -0.2 103,266 + +0.4 103,267 - -0.6 103,267 - +0.6 103,273 + +1.1 103,274 - +0.1 103,274 - -0.2 103,274 - +0.3 103,274 - +0.4 103,274 - +0.7 103,307 - +1.0 103,307 - -1.2 103,307 - +0.0 103,310 + +1.4 103,310 + +1.1 103,311 - -2.3 103,311 - -0.5 103,311 - +0.7 103,311 - +0.0 103,311 - -0.4 103,311 - +0.9 103,525 + PS417_00515 0.16 +1.0 103,525 + PS417_00515 0.16 -0.3 103,531 + PS417_00515 0.17 -2.9 103,708 - PS417_00515 0.40 +0.2 103,789 + PS417_00515 0.50 +0.8 103,789 + PS417_00515 0.50 +0.4 103,789 + PS417_00515 0.50 +1.0 103,790 - PS417_00515 0.50 +1.5 103,790 - PS417_00515 0.50 +1.0 103,790 - PS417_00515 0.50 +0.7 103,790 - PS417_00515 0.50 +0.7 103,790 - PS417_00515 0.50 -0.1 103,790 - PS417_00515 0.50 +1.2 103,790 - PS417_00515 0.50 -2.6 103,790 - PS417_00515 0.50 +1.2 103,855 + PS417_00515 0.59 +1.0 103,856 - PS417_00515 0.59 +0.4 103,856 - PS417_00515 0.59 +2.7 103,856 - PS417_00515 0.59 -0.4 104,037 - PS417_00515 0.82 +2.3 104,048 + PS417_00515 0.84 -1.3 104,048 + PS417_00515 0.84 -0.7 104,049 - PS417_00515 0.84 +0.6 104,049 - PS417_00515 0.84 -1.5 104,049 - PS417_00515 0.84 -0.6 104,049 - PS417_00515 0.84 -0.3 104,049 - PS417_00515 0.84 +0.6 104,049 - PS417_00515 0.84 +1.9 104,195 - -1.5 104,243 + -1.1 104,243 + -0.3 104,243 + -1.3 104,244 - +0.4 104,244 - -0.7 104,291 + -0.3 104,377 - PS417_00520 0.10 +1.9 104,500 - PS417_00520 0.20 +1.7 104,500 - PS417_00520 0.20 +0.5 104,656 + PS417_00520 0.32 -0.2 104,657 - PS417_00520 0.32 -0.5 104,691 - PS417_00520 0.34 -0.4 104,742 + PS417_00520 0.38 +3.3 104,964 + PS417_00520 0.55 -1.4
Or see this region's nucleotide sequence