Experiment: P. simiae Grant Run MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03935 and PS417_03940 overlap by 4 nucleotides PS417_03940 and PS417_03945 are separated by 113 nucleotides PS417_03945 and PS417_03950 are separated by 126 nucleotides PS417_03950 and PS417_03955 overlap by 54 nucleotides
PS417_03935: PS417_03935 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 879,415 to 879,978
_03935
PS417_03940: PS417_03940 - membrane protein, at 879,975 to 880,811
_03940
PS417_03945: PS417_03945 - chemotaxis protein, at 880,925 to 882,955
_03945
PS417_03950: PS417_03950 - hypothetical protein, at 883,082 to 883,513
_03950
PS417_03955: PS417_03955 - hydrolase TatD, at 883,460 to 884,236
_03955
Position (kb) 880
881
882
883 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 880.003 kb on + strand at 880.136 kb on - strand, within PS417_03940 at 880.136 kb on - strand, within PS417_03940 at 880.139 kb on - strand, within PS417_03940 at 880.231 kb on - strand, within PS417_03940 at 880.231 kb on - strand, within PS417_03940 at 880.231 kb on - strand, within PS417_03940 at 880.231 kb on - strand at 880.492 kb on - strand, within PS417_03940 at 880.817 kb on + strand at 880.831 kb on + strand at 880.832 kb on - strand at 880.832 kb on - strand at 880.861 kb on + strand at 880.861 kb on + strand at 880.862 kb on - strand at 880.862 kb on - strand at 880.863 kb on + strand at 880.863 kb on + strand at 880.863 kb on + strand at 880.863 kb on + strand at 880.864 kb on - strand at 880.864 kb on - strand at 880.864 kb on - strand at 880.864 kb on - strand at 880.864 kb on - strand at 880.919 kb on + strand at 881.033 kb on + strand at 881.034 kb on - strand at 881.034 kb on - strand at 881.034 kb on - strand at 881.036 kb on + strand at 881.037 kb on - strand at 881.037 kb on - strand at 881.037 kb on - strand at 881.819 kb on + strand, within PS417_03945 at 881.819 kb on + strand, within PS417_03945 at 881.893 kb on + strand, within PS417_03945 at 881.894 kb on - strand, within PS417_03945 at 881.894 kb on - strand, within PS417_03945 at 881.948 kb on + strand, within PS417_03945 at 881.948 kb on + strand, within PS417_03945 at 881.948 kb on + strand, within PS417_03945 at 881.948 kb on + strand, within PS417_03945 at 881.948 kb on + strand, within PS417_03945 at 881.948 kb on + strand, within PS417_03945 at 881.948 kb on + strand, within PS417_03945 at 881.948 kb on + strand, within PS417_03945 at 881.949 kb on - strand, within PS417_03945 at 881.949 kb on - strand, within PS417_03945 at 881.949 kb on - strand at 881.949 kb on - strand, within PS417_03945 at 881.949 kb on - strand, within PS417_03945 at 881.949 kb on - strand, within PS417_03945 at 881.960 kb on + strand, within PS417_03945 at 881.961 kb on - strand, within PS417_03945 at 881.961 kb on - strand, within PS417_03945 at 881.961 kb on - strand, within PS417_03945 at 881.961 kb on - strand, within PS417_03945 at 882.007 kb on + strand, within PS417_03945 at 882.408 kb on + strand, within PS417_03945 at 882.679 kb on + strand, within PS417_03945 at 882.967 kb on - strand at 883.126 kb on + strand at 883.135 kb on + strand, within PS417_03950 at 883.136 kb on - strand, within PS417_03950 at 883.380 kb on + strand, within PS417_03950 at 883.380 kb on + strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.461 kb on + strand at 883.590 kb on + strand, within PS417_03955 at 883.629 kb on - strand, within PS417_03955 at 883.732 kb on - strand, within PS417_03955 at 883.932 kb on + strand, within PS417_03955 at 883.932 kb on + strand, within PS417_03955
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae Grant Run MOI 10 remove 880,003 + -2.0 880,136 - PS417_03940 0.19 -0.3 880,136 - PS417_03940 0.19 -0.4 880,139 - PS417_03940 0.20 +0.9 880,231 - PS417_03940 0.31 -2.5 880,231 - PS417_03940 0.31 -0.2 880,231 - PS417_03940 0.31 -0.3 880,231 - +2.5 880,492 - PS417_03940 0.62 -1.0 880,817 + -1.7 880,831 + +0.6 880,832 - +0.8 880,832 - -1.3 880,861 + +1.2 880,861 + +0.7 880,862 - +1.2 880,862 - -0.6 880,863 + +0.6 880,863 + +1.0 880,863 + +0.7 880,863 + +1.2 880,864 - -1.0 880,864 - -0.7 880,864 - +0.5 880,864 - +0.2 880,864 - +0.1 880,919 + +1.1 881,033 + +2.0 881,034 - +3.0 881,034 - +0.8 881,034 - +0.6 881,036 + +1.7 881,037 - +1.3 881,037 - +0.5 881,037 - -0.7 881,819 + PS417_03945 0.44 -0.7 881,819 + PS417_03945 0.44 -0.8 881,893 + PS417_03945 0.48 -1.7 881,894 - PS417_03945 0.48 +2.3 881,894 - PS417_03945 0.48 -0.5 881,948 + PS417_03945 0.50 -2.0 881,948 + PS417_03945 0.50 +1.3 881,948 + PS417_03945 0.50 +0.4 881,948 + PS417_03945 0.50 -0.2 881,948 + PS417_03945 0.50 -0.6 881,948 + PS417_03945 0.50 -2.6 881,948 + PS417_03945 0.50 -0.7 881,948 + PS417_03945 0.50 -0.3 881,949 - PS417_03945 0.50 +1.0 881,949 - PS417_03945 0.50 -1.3 881,949 - -0.3 881,949 - PS417_03945 0.50 -0.7 881,949 - PS417_03945 0.50 -2.9 881,949 - PS417_03945 0.50 +0.2 881,960 + PS417_03945 0.51 -0.5 881,961 - PS417_03945 0.51 +0.9 881,961 - PS417_03945 0.51 -1.2 881,961 - PS417_03945 0.51 -0.7 881,961 - PS417_03945 0.51 -1.5 882,007 + PS417_03945 0.53 -0.0 882,408 + PS417_03945 0.73 +0.5 882,679 + PS417_03945 0.86 -0.1 882,967 - -0.1 883,126 + -0.7 883,135 + PS417_03950 0.12 -0.2 883,136 - PS417_03950 0.12 +2.1 883,380 + PS417_03950 0.69 -0.9 883,380 + PS417_03950 0.69 +0.1 883,381 - PS417_03950 0.69 -0.5 883,381 - PS417_03950 0.69 -0.7 883,381 - PS417_03950 0.69 +0.3 883,381 - PS417_03950 0.69 +1.0 883,381 - PS417_03950 0.69 -1.8 883,461 + -0.1 883,590 + PS417_03955 0.17 -0.7 883,629 - PS417_03955 0.22 -1.0 883,732 - PS417_03955 0.35 -0.4 883,932 + PS417_03955 0.61 -0.6 883,932 + PS417_03955 0.61 +0.7
Or see this region's nucleotide sequence