Experiment: P. simiae ORA MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04125 and PS417_04130 are separated by 148 nucleotides PS417_04130 and PS417_04135 are separated by 145 nucleotides
PS417_04125: PS417_04125 - ATPase, at 927,383 to 928,477
_04125
PS417_04130: PS417_04130 - AraC family transcriptional regulator, at 928,626 to 929,621
_04130
PS417_04135: PS417_04135 - acyl-CoA dehydrogenase, at 929,767 to 930,903
_04135
Position (kb) 928
929
930 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 927.890 kb on + strand, within PS417_04125 at 928.380 kb on - strand at 928.537 kb on - strand at 928.537 kb on - strand at 928.540 kb on + strand at 928.540 kb on + strand at 928.540 kb on + strand at 928.541 kb on - strand at 928.717 kb on + strand at 928.730 kb on - strand, within PS417_04130 at 928.730 kb on - strand, within PS417_04130 at 928.730 kb on - strand, within PS417_04130 at 928.805 kb on - strand, within PS417_04130 at 928.959 kb on + strand, within PS417_04130 at 928.960 kb on - strand, within PS417_04130 at 928.960 kb on - strand, within PS417_04130 at 928.996 kb on + strand, within PS417_04130 at 929.075 kb on - strand, within PS417_04130 at 929.078 kb on + strand, within PS417_04130 at 929.078 kb on + strand, within PS417_04130 at 929.078 kb on + strand, within PS417_04130 at 929.079 kb on - strand, within PS417_04130 at 929.079 kb on - strand, within PS417_04130 at 929.079 kb on - strand, within PS417_04130 at 929.080 kb on + strand, within PS417_04130 at 929.080 kb on + strand, within PS417_04130 at 929.080 kb on + strand, within PS417_04130 at 929.081 kb on - strand, within PS417_04130 at 929.117 kb on - strand, within PS417_04130 at 929.161 kb on - strand, within PS417_04130 at 929.161 kb on - strand, within PS417_04130 at 929.203 kb on + strand, within PS417_04130 at 929.204 kb on - strand, within PS417_04130 at 929.304 kb on + strand, within PS417_04130 at 929.304 kb on + strand, within PS417_04130 at 929.305 kb on - strand, within PS417_04130 at 929.305 kb on - strand, within PS417_04130 at 929.615 kb on + strand at 929.622 kb on - strand at 929.622 kb on - strand at 929.631 kb on + strand at 929.638 kb on - strand at 929.720 kb on + strand at 929.720 kb on + strand at 929.721 kb on - strand at 929.721 kb on - strand at 929.721 kb on - strand at 929.878 kb on + strand at 929.878 kb on + strand at 929.879 kb on - strand at 930.058 kb on + strand, within PS417_04135 at 930.059 kb on - strand, within PS417_04135 at 930.097 kb on + strand, within PS417_04135 at 930.097 kb on + strand, within PS417_04135 at 930.098 kb on - strand, within PS417_04135 at 930.098 kb on - strand, within PS417_04135 at 930.211 kb on + strand, within PS417_04135 at 930.211 kb on + strand, within PS417_04135 at 930.211 kb on + strand, within PS417_04135 at 930.212 kb on - strand, within PS417_04135 at 930.241 kb on - strand, within PS417_04135 at 930.250 kb on + strand, within PS417_04135 at 930.470 kb on - strand, within PS417_04135 at 930.559 kb on + strand, within PS417_04135 at 930.559 kb on + strand, within PS417_04135 at 930.559 kb on + strand, within PS417_04135 at 930.560 kb on - strand, within PS417_04135 at 930.560 kb on - strand, within PS417_04135
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 0.1 remove 927,890 + PS417_04125 0.46 -1.0 928,380 - -1.7 928,537 - +1.3 928,537 - +1.6 928,540 + +0.1 928,540 + +0.5 928,540 + +0.1 928,541 - +0.7 928,717 + -2.8 928,730 - PS417_04130 0.10 +0.8 928,730 - PS417_04130 0.10 -0.4 928,730 - PS417_04130 0.10 -1.4 928,805 - PS417_04130 0.18 -0.3 928,959 + PS417_04130 0.33 +0.9 928,960 - PS417_04130 0.34 -1.4 928,960 - PS417_04130 0.34 -0.3 928,996 + PS417_04130 0.37 -0.3 929,075 - PS417_04130 0.45 -0.6 929,078 + PS417_04130 0.45 -2.7 929,078 + PS417_04130 0.45 -3.3 929,078 + PS417_04130 0.45 +0.6 929,079 - PS417_04130 0.45 +0.2 929,079 - PS417_04130 0.45 -1.3 929,079 - PS417_04130 0.45 -2.8 929,080 + PS417_04130 0.46 +1.0 929,080 + PS417_04130 0.46 +0.2 929,080 + PS417_04130 0.46 -0.5 929,081 - PS417_04130 0.46 +0.9 929,117 - PS417_04130 0.49 -0.5 929,161 - PS417_04130 0.54 -0.1 929,161 - PS417_04130 0.54 -0.1 929,203 + PS417_04130 0.58 -0.4 929,204 - PS417_04130 0.58 +0.4 929,304 + PS417_04130 0.68 +0.3 929,304 + PS417_04130 0.68 -3.5 929,305 - PS417_04130 0.68 +0.9 929,305 - PS417_04130 0.68 -0.1 929,615 + -1.2 929,622 - -0.7 929,622 - +0.9 929,631 + -0.1 929,638 - +0.0 929,720 + -1.5 929,720 + -1.5 929,721 - -1.9 929,721 - +0.6 929,721 - -2.2 929,878 + +0.2 929,878 + -0.1 929,879 - -0.4 930,058 + PS417_04135 0.26 +1.3 930,059 - PS417_04135 0.26 -2.0 930,097 + PS417_04135 0.29 -0.7 930,097 + PS417_04135 0.29 -1.3 930,098 - PS417_04135 0.29 -0.7 930,098 - PS417_04135 0.29 -0.6 930,211 + PS417_04135 0.39 +0.1 930,211 + PS417_04135 0.39 -0.6 930,211 + PS417_04135 0.39 -0.7 930,212 - PS417_04135 0.39 -1.5 930,241 - PS417_04135 0.42 -1.5 930,250 + PS417_04135 0.42 +0.9 930,470 - PS417_04135 0.62 +0.3 930,559 + PS417_04135 0.70 +0.8 930,559 + PS417_04135 0.70 -0.7 930,559 + PS417_04135 0.70 +0.4 930,560 - PS417_04135 0.70 -0.9 930,560 - PS417_04135 0.70 -0.8
Or see this region's nucleotide sequence