Experiment: P. simiae ORA MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09360 and PS417_09365 are separated by 347 nucleotides PS417_09365 and PS417_09370 are separated by 71 nucleotides PS417_09370 and PS417_09375 overlap by 1 nucleotides
PS417_09360: PS417_09360 - ABC transporter substrate-binding protein, at 2,030,380 to 2,031,456
_09360
PS417_09365: PS417_09365 - MFS transporter, at 2,031,804 to 2,032,517
_09365
PS417_09370: PS417_09370 - metal ABC transporter substrate-binding protein, at 2,032,589 to 2,033,503
_09370
PS417_09375: PS417_09375 - zinc ABC transporter permease, at 2,033,503 to 2,034,402
_09375
Position (kb)
2031
2032
2033 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2030.911 kb on + strand, within PS417_09360 at 2030.963 kb on + strand, within PS417_09360 at 2030.963 kb on + strand, within PS417_09360 at 2030.994 kb on + strand, within PS417_09360 at 2031.054 kb on - strand, within PS417_09360 at 2031.122 kb on + strand, within PS417_09360 at 2031.337 kb on + strand, within PS417_09360 at 2031.337 kb on + strand at 2031.526 kb on + strand at 2031.526 kb on + strand at 2031.613 kb on + strand at 2031.656 kb on + strand at 2031.657 kb on - strand at 2031.783 kb on + strand at 2031.792 kb on + strand at 2031.792 kb on + strand at 2031.962 kb on - strand, within PS417_09365 at 2031.987 kb on + strand at 2032.035 kb on + strand, within PS417_09365 at 2032.224 kb on + strand at 2032.224 kb on + strand, within PS417_09365 at 2032.224 kb on + strand, within PS417_09365 at 2032.224 kb on + strand, within PS417_09365 at 2032.225 kb on - strand, within PS417_09365 at 2032.228 kb on + strand, within PS417_09365 at 2032.229 kb on - strand, within PS417_09365 at 2032.435 kb on - strand, within PS417_09365 at 2032.857 kb on + strand, within PS417_09370 at 2033.346 kb on - strand, within PS417_09370 at 2033.349 kb on - strand, within PS417_09370
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 0.1 remove 2,030,911 + PS417_09360 0.49 -2.7 2,030,963 + PS417_09360 0.54 -3.7 2,030,963 + PS417_09360 0.54 +0.7 2,030,994 + PS417_09360 0.57 -0.7 2,031,054 - PS417_09360 0.63 +0.3 2,031,122 + PS417_09360 0.69 -0.6 2,031,337 + PS417_09360 0.89 -0.1 2,031,337 + -0.5 2,031,526 + +1.0 2,031,526 + +0.5 2,031,613 + -1.7 2,031,656 + -0.3 2,031,657 - +0.4 2,031,783 + -0.1 2,031,792 + -0.5 2,031,792 + +0.9 2,031,962 - PS417_09365 0.22 -0.4 2,031,987 + +1.3 2,032,035 + PS417_09365 0.32 -2.2 2,032,224 + -0.9 2,032,224 + PS417_09365 0.59 +0.1 2,032,224 + PS417_09365 0.59 -0.0 2,032,224 + PS417_09365 0.59 +0.2 2,032,225 - PS417_09365 0.59 -0.5 2,032,228 + PS417_09365 0.59 -2.0 2,032,229 - PS417_09365 0.60 -3.0 2,032,435 - PS417_09365 0.88 -1.0 2,032,857 + PS417_09370 0.29 +0.2 2,033,346 - PS417_09370 0.83 -1.2 2,033,349 - PS417_09370 0.83 -1.2
Or see this region's nucleotide sequence