Experiment: P. simiae ORA MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03205 and PS417_03210 are separated by 194 nucleotides PS417_03210 and PS417_03215 are separated by 0 nucleotides
PS417_03205: PS417_03205 - adenine deaminase, at 732,667 to 733,620
_03205
PS417_03210: PS417_03210 - calcium:proton antiporter, at 733,815 to 734,906
_03210
PS417_03215: PS417_03215 - 8-oxoguanine deaminase, at 734,907 to 736,262
_03215
Position (kb) 733
734
735 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 733.013 kb on + strand, within PS417_03205 at 733.014 kb on - strand, within PS417_03205 at 733.397 kb on + strand, within PS417_03205 at 733.397 kb on + strand, within PS417_03205 at 733.397 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.437 kb on - strand, within PS417_03205 at 733.437 kb on - strand, within PS417_03205 at 733.439 kb on + strand, within PS417_03205 at 733.440 kb on - strand, within PS417_03205 at 733.464 kb on + strand, within PS417_03205 at 733.476 kb on - strand, within PS417_03205 at 733.736 kb on + strand at 733.737 kb on - strand at 733.774 kb on + strand at 733.802 kb on + strand at 733.802 kb on + strand at 734.124 kb on + strand, within PS417_03210 at 734.125 kb on - strand, within PS417_03210 at 734.230 kb on - strand, within PS417_03210 at 734.343 kb on + strand, within PS417_03210 at 734.343 kb on + strand, within PS417_03210 at 734.343 kb on + strand, within PS417_03210 at 734.343 kb on + strand at 734.343 kb on + strand, within PS417_03210 at 734.343 kb on + strand, within PS417_03210 at 734.344 kb on - strand, within PS417_03210 at 734.344 kb on - strand, within PS417_03210 at 734.344 kb on - strand, within PS417_03210 at 734.344 kb on - strand, within PS417_03210 at 734.344 kb on - strand, within PS417_03210 at 734.382 kb on + strand, within PS417_03210 at 734.382 kb on + strand, within PS417_03210 at 734.394 kb on + strand, within PS417_03210 at 734.667 kb on - strand, within PS417_03210 at 734.667 kb on - strand, within PS417_03210 at 734.667 kb on - strand, within PS417_03210 at 734.880 kb on - strand at 734.905 kb on - strand at 735.192 kb on + strand, within PS417_03215 at 735.241 kb on + strand, within PS417_03215 at 735.241 kb on + strand, within PS417_03215 at 735.242 kb on - strand, within PS417_03215 at 735.242 kb on - strand, within PS417_03215 at 735.496 kb on + strand, within PS417_03215 at 735.496 kb on + strand, within PS417_03215 at 735.497 kb on - strand, within PS417_03215 at 735.497 kb on - strand, within PS417_03215 at 735.691 kb on + strand, within PS417_03215 at 735.692 kb on - strand, within PS417_03215 at 735.837 kb on + strand, within PS417_03215 at 735.838 kb on - strand, within PS417_03215 at 735.843 kb on + strand, within PS417_03215 at 735.880 kb on + strand, within PS417_03215 at 735.880 kb on + strand, within PS417_03215 at 735.881 kb on - strand, within PS417_03215
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 0.1 remove 733,013 + PS417_03205 0.36 +0.1 733,014 - PS417_03205 0.36 +0.1 733,397 + PS417_03205 0.77 +1.5 733,397 + PS417_03205 0.77 -0.5 733,397 + PS417_03205 0.77 -1.9 733,436 + PS417_03205 0.81 -1.5 733,436 + PS417_03205 0.81 +1.3 733,436 + PS417_03205 0.81 -2.5 733,436 + PS417_03205 0.81 -0.5 733,436 + PS417_03205 0.81 -0.8 733,436 + PS417_03205 0.81 +0.4 733,436 + PS417_03205 0.81 +0.8 733,437 - PS417_03205 0.81 +1.0 733,437 - PS417_03205 0.81 -0.3 733,439 + PS417_03205 0.81 -0.8 733,440 - PS417_03205 0.81 +3.6 733,464 + PS417_03205 0.84 -2.2 733,476 - PS417_03205 0.85 -0.3 733,736 + -0.8 733,737 - -1.3 733,774 + -0.9 733,802 + +1.2 733,802 + +1.9 734,124 + PS417_03210 0.28 -0.2 734,125 - PS417_03210 0.28 -2.3 734,230 - PS417_03210 0.38 +1.6 734,343 + PS417_03210 0.48 -1.8 734,343 + PS417_03210 0.48 +1.1 734,343 + PS417_03210 0.48 -1.4 734,343 + +0.4 734,343 + PS417_03210 0.48 +1.3 734,343 + PS417_03210 0.48 -0.5 734,344 - PS417_03210 0.48 -0.3 734,344 - PS417_03210 0.48 +0.2 734,344 - PS417_03210 0.48 -0.0 734,344 - PS417_03210 0.48 -1.7 734,344 - PS417_03210 0.48 -1.3 734,382 + PS417_03210 0.52 -0.1 734,382 + PS417_03210 0.52 +0.0 734,394 + PS417_03210 0.53 -0.8 734,667 - PS417_03210 0.78 -1.3 734,667 - PS417_03210 0.78 -0.3 734,667 - PS417_03210 0.78 -0.2 734,880 - +0.5 734,905 - -0.1 735,192 + PS417_03215 0.21 +0.2 735,241 + PS417_03215 0.25 -0.6 735,241 + PS417_03215 0.25 -1.6 735,242 - PS417_03215 0.25 -0.9 735,242 - PS417_03215 0.25 +0.4 735,496 + PS417_03215 0.43 -3.3 735,496 + PS417_03215 0.43 -2.0 735,497 - PS417_03215 0.44 +0.2 735,497 - PS417_03215 0.44 +0.8 735,691 + PS417_03215 0.58 -1.6 735,692 - PS417_03215 0.58 -4.0 735,837 + PS417_03215 0.69 +0.0 735,838 - PS417_03215 0.69 +1.4 735,843 + PS417_03215 0.69 -0.8 735,880 + PS417_03215 0.72 -0.8 735,880 + PS417_03215 0.72 -1.9 735,881 - PS417_03215 0.72 -3.0
Or see this region's nucleotide sequence