Experiment: P. simiae ORA MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24955 and PS417_24960 are separated by 112 nucleotides PS417_24960 and PS417_24965 are separated by 81 nucleotides
PS417_24955: PS417_24955 - hypothetical protein, at 5,411,756 to 5,411,992
_24955
PS417_24960: PS417_24960 - transposase, at 5,412,105 to 5,413,682
_24960
PS417_24965: PS417_24965 - transposase, at 5,413,764 to 5,414,099
_24965
Position (kb) 5412
5413
5414 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5411.105 kb on - strand at 5411.108 kb on + strand at 5411.108 kb on + strand at 5411.108 kb on + strand at 5411.108 kb on + strand at 5411.108 kb on + strand at 5411.108 kb on + strand at 5411.108 kb on + strand at 5411.108 kb on + strand at 5411.109 kb on - strand at 5411.109 kb on - strand at 5411.125 kb on + strand at 5411.179 kb on + strand at 5411.218 kb on + strand at 5411.219 kb on - strand at 5411.219 kb on - strand at 5411.238 kb on + strand at 5411.238 kb on + strand at 5411.238 kb on + strand at 5411.239 kb on - strand at 5411.239 kb on - strand at 5411.239 kb on - strand at 5411.239 kb on - strand at 5411.239 kb on - strand at 5411.239 kb on - strand at 5411.239 kb on - strand at 5411.239 kb on - strand at 5411.368 kb on + strand at 5411.378 kb on + strand at 5411.378 kb on + strand at 5411.379 kb on - strand at 5411.379 kb on - strand at 5411.408 kb on + strand at 5411.423 kb on + strand at 5411.445 kb on - strand at 5411.445 kb on - strand at 5411.480 kb on + strand at 5411.480 kb on + strand at 5411.535 kb on - strand at 5411.575 kb on + strand at 5411.575 kb on + strand at 5411.576 kb on - strand at 5411.576 kb on - strand at 5411.577 kb on + strand at 5411.577 kb on + strand at 5411.578 kb on - strand at 5411.578 kb on - strand at 5411.578 kb on - strand at 5411.578 kb on - strand at 5411.578 kb on - strand at 5411.633 kb on + strand at 5411.633 kb on + strand at 5411.634 kb on - strand at 5411.663 kb on + strand at 5411.663 kb on + strand at 5411.664 kb on - strand at 5411.683 kb on + strand at 5411.684 kb on - strand at 5411.725 kb on + strand at 5411.726 kb on - strand at 5411.726 kb on - strand at 5411.739 kb on + strand at 5411.740 kb on - strand at 5411.763 kb on + strand at 5411.764 kb on - strand at 5411.764 kb on - strand at 5411.797 kb on + strand, within PS417_24955 at 5411.797 kb on + strand, within PS417_24955 at 5411.798 kb on - strand, within PS417_24955 at 5411.802 kb on + strand, within PS417_24955 at 5411.802 kb on + strand, within PS417_24955 at 5411.803 kb on - strand, within PS417_24955 at 5411.803 kb on - strand, within PS417_24955 at 5411.803 kb on - strand, within PS417_24955 at 5411.803 kb on - strand, within PS417_24955 at 5411.803 kb on - strand, within PS417_24955 at 5411.803 kb on - strand at 5411.803 kb on - strand, within PS417_24955 at 5411.855 kb on + strand, within PS417_24955 at 5411.855 kb on + strand, within PS417_24955 at 5411.855 kb on + strand, within PS417_24955 at 5411.856 kb on - strand, within PS417_24955 at 5411.860 kb on + strand, within PS417_24955 at 5411.860 kb on + strand, within PS417_24955 at 5411.860 kb on + strand, within PS417_24955 at 5411.860 kb on + strand at 5411.860 kb on + strand, within PS417_24955 at 5411.860 kb on + strand, within PS417_24955 at 5411.861 kb on - strand, within PS417_24955 at 5411.861 kb on - strand, within PS417_24955 at 5411.861 kb on - strand, within PS417_24955 at 5411.861 kb on - strand, within PS417_24955 at 5411.991 kb on - strand at 5412.073 kb on + strand at 5412.073 kb on + strand at 5412.074 kb on - strand at 5412.091 kb on + strand at 5412.106 kb on + strand at 5412.107 kb on - strand at 5412.117 kb on + strand at 5412.118 kb on - strand at 5412.186 kb on + strand at 5412.186 kb on + strand at 5412.187 kb on - strand at 5412.187 kb on - strand at 5412.199 kb on + strand at 5412.199 kb on + strand at 5412.200 kb on - strand at 5412.200 kb on - strand at 5412.205 kb on + strand at 5412.217 kb on - strand at 5412.325 kb on - strand, within PS417_24960 at 5412.473 kb on + strand, within PS417_24960 at 5412.558 kb on + strand, within PS417_24960 at 5412.566 kb on - strand, within PS417_24960 at 5412.580 kb on + strand, within PS417_24960 at 5412.580 kb on + strand, within PS417_24960 at 5412.581 kb on - strand, within PS417_24960 at 5412.695 kb on + strand, within PS417_24960 at 5412.695 kb on + strand, within PS417_24960 at 5412.696 kb on - strand, within PS417_24960 at 5412.696 kb on - strand, within PS417_24960 at 5412.696 kb on - strand, within PS417_24960 at 5412.696 kb on - strand, within PS417_24960 at 5412.697 kb on + strand, within PS417_24960 at 5412.698 kb on - strand, within PS417_24960 at 5412.698 kb on - strand, within PS417_24960 at 5412.717 kb on + strand, within PS417_24960 at 5412.718 kb on - strand, within PS417_24960 at 5412.788 kb on - strand, within PS417_24960 at 5412.788 kb on - strand, within PS417_24960 at 5412.788 kb on - strand, within PS417_24960 at 5412.788 kb on - strand, within PS417_24960 at 5412.838 kb on + strand, within PS417_24960 at 5412.838 kb on + strand, within PS417_24960 at 5412.900 kb on + strand, within PS417_24960 at 5412.901 kb on - strand, within PS417_24960 at 5412.901 kb on - strand, within PS417_24960 at 5412.918 kb on + strand, within PS417_24960 at 5413.060 kb on + strand, within PS417_24960 at 5413.061 kb on - strand, within PS417_24960 at 5413.061 kb on - strand, within PS417_24960 at 5413.103 kb on + strand, within PS417_24960 at 5413.104 kb on - strand, within PS417_24960 at 5413.181 kb on + strand, within PS417_24960 at 5413.213 kb on + strand, within PS417_24960 at 5413.337 kb on + strand, within PS417_24960 at 5413.338 kb on - strand, within PS417_24960 at 5413.550 kb on + strand at 5413.654 kb on - strand at 5413.654 kb on - strand at 5413.736 kb on + strand at 5413.981 kb on + strand at 5413.981 kb on + strand, within PS417_24965 at 5413.981 kb on + strand at 5413.982 kb on - strand at 5413.982 kb on - strand, within PS417_24965 at 5413.982 kb on - strand, within PS417_24965 at 5414.157 kb on - strand at 5414.178 kb on + strand at 5414.178 kb on + strand at 5414.184 kb on - strand at 5414.213 kb on + strand at 5414.213 kb on + strand at 5414.237 kb on + strand at 5414.237 kb on + strand at 5414.237 kb on + strand at 5414.237 kb on + strand at 5414.400 kb on + strand at 5414.400 kb on + strand at 5414.401 kb on - strand at 5414.401 kb on - strand at 5414.455 kb on - strand at 5414.494 kb on + strand at 5414.526 kb on + strand at 5414.584 kb on + strand at 5414.584 kb on + strand at 5414.585 kb on - strand at 5414.585 kb on - strand at 5414.612 kb on + strand at 5414.612 kb on + strand at 5414.613 kb on - strand at 5414.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 0.1 remove 5,411,105 - +2.3 5,411,108 + -2.2 5,411,108 + -0.1 5,411,108 + +0.1 5,411,108 + -0.1 5,411,108 + -1.5 5,411,108 + +0.2 5,411,108 + -0.3 5,411,108 + +0.5 5,411,109 - -0.8 5,411,109 - +0.1 5,411,125 + +0.5 5,411,179 + -1.2 5,411,218 + -0.4 5,411,219 - +0.0 5,411,219 - +1.9 5,411,238 + +0.1 5,411,238 + +0.3 5,411,238 + +0.7 5,411,239 - +0.4 5,411,239 - -1.3 5,411,239 - -2.0 5,411,239 - -0.6 5,411,239 - -4.7 5,411,239 - -1.0 5,411,239 - -1.0 5,411,239 - +1.0 5,411,368 + -2.0 5,411,378 + -2.4 5,411,378 + -0.0 5,411,379 - -0.1 5,411,379 - -2.7 5,411,408 + +0.1 5,411,423 + +0.1 5,411,445 - -1.8 5,411,445 - +0.3 5,411,480 + +2.6 5,411,480 + -0.3 5,411,535 - +0.2 5,411,575 + -0.7 5,411,575 + +0.9 5,411,576 - -3.1 5,411,576 - -0.2 5,411,577 + -0.4 5,411,577 + +1.3 5,411,578 - -2.4 5,411,578 - -0.2 5,411,578 - -1.0 5,411,578 - -1.7 5,411,578 - -1.7 5,411,633 + -4.4 5,411,633 + -0.7 5,411,634 - -2.0 5,411,663 + +0.3 5,411,663 + -2.6 5,411,664 - +1.1 5,411,683 + +0.5 5,411,684 - +0.3 5,411,725 + +0.9 5,411,726 - -1.0 5,411,726 - +0.7 5,411,739 + +1.6 5,411,740 - +0.4 5,411,763 + +0.5 5,411,764 - -0.7 5,411,764 - -0.8 5,411,797 + PS417_24955 0.17 -0.3 5,411,797 + PS417_24955 0.17 -0.8 5,411,798 - PS417_24955 0.18 -2.6 5,411,802 + PS417_24955 0.19 -0.5 5,411,802 + PS417_24955 0.19 +0.7 5,411,803 - PS417_24955 0.20 +0.7 5,411,803 - PS417_24955 0.20 +0.1 5,411,803 - PS417_24955 0.20 +0.1 5,411,803 - PS417_24955 0.20 -3.5 5,411,803 - PS417_24955 0.20 -3.5 5,411,803 - -1.0 5,411,803 - PS417_24955 0.20 +0.1 5,411,855 + PS417_24955 0.42 -1.2 5,411,855 + PS417_24955 0.42 +0.9 5,411,855 + PS417_24955 0.42 -0.4 5,411,856 - PS417_24955 0.42 -1.5 5,411,860 + PS417_24955 0.44 +0.5 5,411,860 + PS417_24955 0.44 +0.9 5,411,860 + PS417_24955 0.44 +0.2 5,411,860 + -0.4 5,411,860 + PS417_24955 0.44 -0.9 5,411,860 + PS417_24955 0.44 +0.1 5,411,861 - PS417_24955 0.44 +0.5 5,411,861 - PS417_24955 0.44 +0.9 5,411,861 - PS417_24955 0.44 +1.8 5,411,861 - PS417_24955 0.44 -0.7 5,411,991 - -2.2 5,412,073 + -0.1 5,412,073 + +2.9 5,412,074 - +0.7 5,412,091 + +0.3 5,412,106 + +1.0 5,412,107 - +1.1 5,412,117 + -0.5 5,412,118 - -0.5 5,412,186 + +2.0 5,412,186 + +0.7 5,412,187 - +1.1 5,412,187 - -1.0 5,412,199 + -0.0 5,412,199 + +1.1 5,412,200 - -1.4 5,412,200 - -0.1 5,412,205 + +1.0 5,412,217 - -0.9 5,412,325 - PS417_24960 0.14 -0.1 5,412,473 + PS417_24960 0.23 -1.1 5,412,558 + PS417_24960 0.29 -0.8 5,412,566 - PS417_24960 0.29 -0.4 5,412,580 + PS417_24960 0.30 -0.9 5,412,580 + PS417_24960 0.30 -0.1 5,412,581 - PS417_24960 0.30 -0.6 5,412,695 + PS417_24960 0.37 +0.4 5,412,695 + PS417_24960 0.37 +0.3 5,412,696 - PS417_24960 0.37 -0.2 5,412,696 - PS417_24960 0.37 +2.0 5,412,696 - PS417_24960 0.37 -0.7 5,412,696 - PS417_24960 0.37 +0.1 5,412,697 + PS417_24960 0.38 +0.4 5,412,698 - PS417_24960 0.38 -0.1 5,412,698 - PS417_24960 0.38 -0.9 5,412,717 + PS417_24960 0.39 -0.2 5,412,718 - PS417_24960 0.39 +0.8 5,412,788 - PS417_24960 0.43 +0.0 5,412,788 - PS417_24960 0.43 -1.8 5,412,788 - PS417_24960 0.43 -3.0 5,412,788 - PS417_24960 0.43 -2.2 5,412,838 + PS417_24960 0.46 +0.3 5,412,838 + PS417_24960 0.46 +0.2 5,412,900 + PS417_24960 0.50 +0.3 5,412,901 - PS417_24960 0.50 -0.9 5,412,901 - PS417_24960 0.50 -0.7 5,412,918 + PS417_24960 0.52 -3.8 5,413,060 + PS417_24960 0.61 -0.2 5,413,061 - PS417_24960 0.61 -0.8 5,413,061 - PS417_24960 0.61 +1.3 5,413,103 + PS417_24960 0.63 -0.4 5,413,104 - PS417_24960 0.63 -0.2 5,413,181 + PS417_24960 0.68 -1.4 5,413,213 + PS417_24960 0.70 +0.3 5,413,337 + PS417_24960 0.78 +0.3 5,413,338 - PS417_24960 0.78 +0.6 5,413,550 + -1.3 5,413,654 - -0.5 5,413,654 - -1.0 5,413,736 + -0.6 5,413,981 + +1.3 5,413,981 + PS417_24965 0.65 +2.5 5,413,981 + -0.7 5,413,982 - +0.0 5,413,982 - PS417_24965 0.65 +3.2 5,413,982 - PS417_24965 0.65 -2.1 5,414,157 - +0.7 5,414,178 + +0.3 5,414,178 + +1.2 5,414,184 - -0.2 5,414,213 + +0.3 5,414,213 + -0.1 5,414,237 + -2.5 5,414,237 + +0.7 5,414,237 + +0.8 5,414,237 + +0.9 5,414,400 + -1.9 5,414,400 + -1.7 5,414,401 - -0.7 5,414,401 - +1.4 5,414,455 - -0.7 5,414,494 + +0.0 5,414,526 + -0.8 5,414,584 + -0.1 5,414,584 + -1.4 5,414,585 - -1.7 5,414,585 - -1.6 5,414,612 + +0.9 5,414,612 + +0.1 5,414,613 - +0.4 5,414,613 - -0.6
Or see this region's nucleotide sequence