Strain Fitness in Pseudomonas simiae WCS417 around PS417_06130

Experiment: P. simiae ORA MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06120 and PS417_06125 are separated by 22 nucleotidesPS417_06125 and PS417_06130 are separated by 40 nucleotidesPS417_06130 and PS417_06135 are separated by 51 nucleotides PS417_06120: PS417_06120 - hypothetical protein, at 1,357,578 to 1,357,850 _06120 PS417_06125: PS417_06125 - hypothetical protein, at 1,357,873 to 1,358,562 _06125 PS417_06130: PS417_06130 - hypothetical protein, at 1,358,603 to 1,359,004 _06130 PS417_06135: PS417_06135 - glycerol-3-phosphate acyltransferase, at 1,359,056 to 1,361,575 _06135 Position (kb) 1358 1359 1360Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1357.605 kb on + strandat 1357.606 kb on - strand, within PS417_06120at 1357.612 kb on - strand, within PS417_06120at 1357.623 kb on + strand, within PS417_06120at 1357.642 kb on - strand, within PS417_06120at 1357.642 kb on - strand, within PS417_06120at 1357.657 kb on - strand, within PS417_06120at 1357.680 kb on + strand, within PS417_06120at 1357.680 kb on + strand, within PS417_06120at 1357.681 kb on - strand, within PS417_06120at 1357.731 kb on + strand, within PS417_06120at 1357.732 kb on - strand, within PS417_06120at 1357.739 kb on + strand, within PS417_06120at 1357.740 kb on - strand, within PS417_06120at 1357.874 kb on + strandat 1358.063 kb on + strand, within PS417_06125at 1358.063 kb on + strandat 1358.063 kb on + strand, within PS417_06125at 1358.064 kb on - strand, within PS417_06125at 1358.064 kb on - strand, within PS417_06125at 1358.064 kb on - strand, within PS417_06125at 1358.577 kb on + strandat 1358.588 kb on - strandat 1358.686 kb on + strand, within PS417_06130at 1358.687 kb on - strand, within PS417_06130at 1358.694 kb on - strand, within PS417_06130at 1358.694 kb on - strand, within PS417_06130at 1358.763 kb on + strand, within PS417_06130at 1358.763 kb on + strand, within PS417_06130at 1358.764 kb on - strand, within PS417_06130at 1358.764 kb on - strand, within PS417_06130at 1358.907 kb on + strand, within PS417_06130at 1359.051 kb on + strandat 1359.051 kb on + strandat 1359.052 kb on - strandat 1359.052 kb on - strandat 1359.412 kb on - strand, within PS417_06135at 1359.423 kb on + strand, within PS417_06135at 1359.741 kb on + strand, within PS417_06135at 1359.741 kb on + strand, within PS417_06135at 1359.742 kb on - strand, within PS417_06135at 1359.742 kb on - strand, within PS417_06135at 1359.909 kb on + strand, within PS417_06135at 1359.910 kb on - strand, within PS417_06135at 1359.910 kb on - strand, within PS417_06135

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Per-strain Table

Position Strand Gene LocusTag Fraction P. simiae ORA MOI 0.1
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1,357,605 + +0.6
1,357,606 - PS417_06120 0.10 -0.3
1,357,612 - PS417_06120 0.12 -0.8
1,357,623 + PS417_06120 0.16 +0.6
1,357,642 - PS417_06120 0.23 -0.4
1,357,642 - PS417_06120 0.23 +1.4
1,357,657 - PS417_06120 0.29 +0.1
1,357,680 + PS417_06120 0.37 +0.2
1,357,680 + PS417_06120 0.37 +0.2
1,357,681 - PS417_06120 0.38 -1.6
1,357,731 + PS417_06120 0.56 +0.6
1,357,732 - PS417_06120 0.56 -1.7
1,357,739 + PS417_06120 0.59 -1.7
1,357,740 - PS417_06120 0.59 -3.3
1,357,874 + +0.1
1,358,063 + PS417_06125 0.28 -0.3
1,358,063 + -0.3
1,358,063 + PS417_06125 0.28 +0.3
1,358,064 - PS417_06125 0.28 -0.7
1,358,064 - PS417_06125 0.28 -2.0
1,358,064 - PS417_06125 0.28 -1.3
1,358,577 + -1.0
1,358,588 - +0.6
1,358,686 + PS417_06130 0.21 -0.2
1,358,687 - PS417_06130 0.21 -2.4
1,358,694 - PS417_06130 0.23 +0.3
1,358,694 - PS417_06130 0.23 +0.4
1,358,763 + PS417_06130 0.40 +0.2
1,358,763 + PS417_06130 0.40 +0.2
1,358,764 - PS417_06130 0.40 +1.4
1,358,764 - PS417_06130 0.40 +1.9
1,358,907 + PS417_06130 0.76 +0.6
1,359,051 + -2.5
1,359,051 + -0.7
1,359,052 - +0.1
1,359,052 - -0.9
1,359,412 - PS417_06135 0.14 -0.0
1,359,423 + PS417_06135 0.15 +1.3
1,359,741 + PS417_06135 0.27 -1.3
1,359,741 + PS417_06135 0.27 +0.6
1,359,742 - PS417_06135 0.27 -0.1
1,359,742 - PS417_06135 0.27 -0.3
1,359,909 + PS417_06135 0.34 +0.3
1,359,910 - PS417_06135 0.34 +1.3
1,359,910 - PS417_06135 0.34 +0.1

Or see this region's nucleotide sequence