Strain Fitness in Pseudomonas simiae WCS417 around PS417_05005

Experiment: P. simiae ORA MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae ORA MOI 1
1,112,263	+		PS417_05000	0.66	-0.7
1,112,263	+		PS417_05000	0.66	-0.1
1,112,263	+		PS417_05000	0.66	-0.7
1,112,263	+		PS417_05000	0.66	+0.4
1,112,264	-		PS417_05000	0.66	+0.6
1,112,264	-		PS417_05000	0.66	+0.5
1,112,264	-		PS417_05000	0.66	+0.7
1,112,264	-		PS417_05000	0.66	+0.1
1,112,289	-		PS417_05000	0.67	-0.2
1,112,350	+		PS417_05000	0.70	+1.0
1,112,377	+		PS417_05000	0.71	+0.1
1,112,593	+				-0.0
1,112,593	+		PS417_05000	0.80	-0.3
1,112,680	+		PS417_05000	0.84	+3.5
1,112,680	+		PS417_05000	0.84	-0.8
1,112,681	-		PS417_05000	0.84	-0.6
1,112,681	-		PS417_05000	0.84	+1.3
1,112,686	+		PS417_05000	0.84	+1.5
1,112,840	-				+0.5
1,112,892	+				-1.9
1,112,893	-				+0.6
1,112,917	+				+0.3
1,112,986	+				+3.1
1,112,987	-				-1.5
1,112,989	+				+0.5
1,112,990	-				-0.6
1,112,990	-				-2.4
1,112,990	-				-0.0
1,113,067	+				+0.1
1,113,067	+				-0.3
1,113,068	-				-0.5
1,113,141	-				-0.1
1,113,295	+		PS417_05005	0.12	+0.5
1,113,295	+		PS417_05005	0.12	-0.2
1,113,296	-		PS417_05005	0.12	-0.0
1,113,451	+		PS417_05005	0.23	-1.6
1,113,452	-		PS417_05005	0.23	-0.3
1,113,619	-		PS417_05005	0.34	-1.6
1,113,619	-				+2.0
1,113,622	+		PS417_05005	0.35	-1.4
1,113,622	+		PS417_05005	0.35	-0.8
1,113,622	+		PS417_05005	0.35	-1.1
1,113,623	-		PS417_05005	0.35	-0.5
1,113,623	-				+1.0
1,113,623	-		PS417_05005	0.35	-0.4
1,113,626	-		PS417_05005	0.35	-0.6
1,113,803	-		PS417_05005	0.47	-0.3
1,114,161	+		PS417_05005	0.72	-1.0
1,114,337	+		PS417_05005	0.84	-0.1
1,114,439	-				-0.6
1,114,492	+				-1.3
1,114,492	+				+1.1
1,114,492	+				-0.8
1,114,492	+				+1.3
1,114,493	-				-0.9
1,114,564	+				+0.3
1,114,565	-				-0.5
1,114,578	+				+0.3
1,114,803	+		PS417_05010	0.30	-0.4
1,114,803	+		PS417_05010	0.30	-0.4
1,114,804	-		PS417_05010	0.30	-0.5
1,115,197	-				+1.5
1,115,290	-				+1.0
1,115,385	-				-0.1
1,115,386	+				-0.1
1,115,386	+				-0.0
1,115,386	+				+0.6
1,115,387	-				+0.2
1,115,387	-				-0.2
1,115,413	+				-0.1
1,115,481	-				+0.2
1,115,481	-				+0.3