Experiment: P. simiae ORA MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03965 and PS417_03970 are separated by 0 nucleotides PS417_03970 and PS417_03975 are separated by 11 nucleotides
PS417_03965: PS417_03965 - fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components <small>(from data)</small>, at 885,528 to 888,386
_03965
PS417_03970: PS417_03970 - 1-phosphofructokinase, at 888,387 to 889,307
_03970
PS417_03975: PS417_03975 - FruA, at 889,319 to 891,028
_03975
Position (kb) 888
889
890 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 888.054 kb on + strand, within PS417_03965 at 888.383 kb on - strand at 888.384 kb on + strand at 888.385 kb on - strand at 888.385 kb on - strand at 888.385 kb on - strand at 888.385 kb on - strand at 889.057 kb on - strand, within PS417_03970 at 889.305 kb on + strand at 889.306 kb on - strand at 889.306 kb on - strand at 889.511 kb on - strand, within PS417_03975 at 889.625 kb on + strand, within PS417_03975 at 889.626 kb on - strand, within PS417_03975 at 889.626 kb on - strand, within PS417_03975 at 889.626 kb on - strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.664 kb on - strand, within PS417_03975 at 889.664 kb on - strand, within PS417_03975 at 889.664 kb on - strand, within PS417_03975 at 889.664 kb on - strand, within PS417_03975 at 889.664 kb on - strand, within PS417_03975 at 889.751 kb on + strand, within PS417_03975 at 889.751 kb on + strand, within PS417_03975 at 890.193 kb on - strand, within PS417_03975 at 890.201 kb on + strand, within PS417_03975 at 890.289 kb on + strand, within PS417_03975
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 1 remove 888,054 + PS417_03965 0.88 -2.2 888,383 - +0.4 888,384 + -1.3 888,385 - +2.8 888,385 - +0.7 888,385 - +0.3 888,385 - -0.5 889,057 - PS417_03970 0.73 +0.7 889,305 + +2.7 889,306 - -1.4 889,306 - +1.4 889,511 - PS417_03975 0.11 +0.9 889,625 + PS417_03975 0.18 +0.6 889,626 - PS417_03975 0.18 -1.4 889,626 - PS417_03975 0.18 +2.6 889,626 - PS417_03975 0.18 +1.0 889,663 + PS417_03975 0.20 +0.6 889,663 + PS417_03975 0.20 +1.6 889,663 + PS417_03975 0.20 +0.5 889,663 + PS417_03975 0.20 +0.2 889,663 + PS417_03975 0.20 -0.3 889,663 + PS417_03975 0.20 +1.5 889,663 + PS417_03975 0.20 -0.7 889,663 + PS417_03975 0.20 -2.7 889,664 - PS417_03975 0.20 +0.3 889,664 - PS417_03975 0.20 +1.7 889,664 - PS417_03975 0.20 -0.2 889,664 - PS417_03975 0.20 +1.5 889,664 - PS417_03975 0.20 -0.3 889,751 + PS417_03975 0.25 +1.3 889,751 + PS417_03975 0.25 +1.5 890,193 - PS417_03975 0.51 +1.0 890,201 + PS417_03975 0.52 -0.7 890,289 + PS417_03975 0.57 -0.1
Or see this region's nucleotide sequence