Experiment: P. simiae ORA MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03960 and PS417_03965 are separated by 293 nucleotides PS417_03965 and PS417_03970 are separated by 0 nucleotides PS417_03970 and PS417_03975 are separated by 11 nucleotides
PS417_03960: PS417_03960 - transcriptional regulator, at 884,239 to 885,234
_03960
PS417_03965: PS417_03965 - fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components <small>(from data)</small>, at 885,528 to 888,386
_03965
PS417_03970: PS417_03970 - 1-phosphofructokinase, at 888,387 to 889,307
_03970
PS417_03975: PS417_03975 - FruA, at 889,319 to 891,028
_03975
Position (kb) 885
886
887
888
889 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 885.179 kb on + strand at 885.179 kb on + strand at 885.179 kb on + strand at 885.180 kb on - strand at 885.492 kb on + strand at 885.492 kb on + strand at 885.496 kb on + strand at 885.496 kb on + strand at 885.513 kb on - strand at 885.513 kb on - strand at 885.517 kb on - strand at 885.517 kb on - strand at 885.517 kb on - strand at 885.544 kb on + strand at 885.643 kb on - strand at 885.808 kb on - strand at 886.274 kb on - strand, within PS417_03965 at 886.274 kb on - strand, within PS417_03965 at 886.288 kb on + strand, within PS417_03965 at 886.524 kb on - strand, within PS417_03965 at 887.163 kb on + strand, within PS417_03965 at 887.342 kb on + strand, within PS417_03965 at 887.343 kb on - strand, within PS417_03965 at 888.054 kb on + strand, within PS417_03965 at 888.383 kb on - strand at 888.384 kb on + strand at 888.385 kb on - strand at 888.385 kb on - strand at 888.385 kb on - strand at 888.385 kb on - strand at 889.057 kb on - strand, within PS417_03970 at 889.305 kb on + strand at 889.306 kb on - strand at 889.306 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 1 remove 885,179 + -0.2 885,179 + +0.0 885,179 + -3.4 885,180 - -1.4 885,492 + +1.6 885,492 + -1.8 885,496 + -1.4 885,496 + +0.1 885,513 - -0.1 885,513 - -0.0 885,517 - +1.2 885,517 - +0.6 885,517 - -1.4 885,544 + +0.5 885,643 - -0.4 885,808 - +0.8 886,274 - PS417_03965 0.26 +2.1 886,274 - PS417_03965 0.26 +0.4 886,288 + PS417_03965 0.27 +0.6 886,524 - PS417_03965 0.35 +1.6 887,163 + PS417_03965 0.57 +0.7 887,342 + PS417_03965 0.63 +0.1 887,343 - PS417_03965 0.63 +0.8 888,054 + PS417_03965 0.88 -2.2 888,383 - +0.4 888,384 + -1.3 888,385 - +2.8 888,385 - +0.7 888,385 - +0.3 888,385 - -0.5 889,057 - PS417_03970 0.73 +0.7 889,305 + +2.7 889,306 - -1.4 889,306 - +1.4
Or see this region's nucleotide sequence