Strain Fitness in Pseudomonas simiae WCS417 around PS417_03465

Experiment: P. simiae ORA MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03460 and PS417_03465 are separated by 34 nucleotidesPS417_03465 and PS417_03470 overlap by 4 nucleotides PS417_03460: PS417_03460 - type III secretion protein HrpI, at 795,034 to 797,127 _03460 PS417_03465: PS417_03465 - type III secretion protein, at 797,162 to 798,061 _03465 PS417_03470: PS417_03470 - ATP synthase, at 798,058 to 799,416 _03470 Position (kb) 797 798 799Strain fitness (log2 ratio) -2 -1 0 1at 796.781 kb on - strand, within PS417_03460at 797.404 kb on - strand, within PS417_03465at 797.521 kb on + strand, within PS417_03465at 797.522 kb on - strand, within PS417_03465at 798.045 kb on - strandat 798.743 kb on + strand, within PS417_03470at 799.015 kb on + strand, within PS417_03470at 799.015 kb on + strand, within PS417_03470at 799.016 kb on - strand, within PS417_03470

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Per-strain Table

Position Strand Gene LocusTag Fraction P. simiae ORA MOI 1
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796,781 - PS417_03460 0.83 -1.1
797,404 - PS417_03465 0.27 -0.4
797,521 + PS417_03465 0.40 -2.2
797,522 - PS417_03465 0.40 -0.7
798,045 - -0.8
798,743 + PS417_03470 0.50 -0.2
799,015 + PS417_03470 0.70 -1.7
799,015 + PS417_03470 0.70 +0.6
799,016 - PS417_03470 0.70 -0.1

Or see this region's nucleotide sequence